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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PIM98915.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 274aa MW: 31090.8 Da PI: 6.2627 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 55.9 | 7.3e-18 | 69 | 122 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k
PIM98915.1 69 KKRRLNIEQVKALERSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 122
4557899**********************************************9 PP
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| 2 | HD-ZIP_I/II | 129.6 | 1.3e-41 | 68 | 159 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
ekkrrl+ eqvk+LE+sFe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lkr+++alk++n++L++++++L+++l
PIM98915.1 68 EKKRRLNIEQVKALERSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQFEALKADNDALKSQNKNLKNQLL 159
69**************************************************************************************9985 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 274 aa Download sequence |
MAFVPVAAGE SMFRNHEDTH FPSSSPQDFH GVPEFLMRRS MSFSGLERAE DLQQDDDMSD 60 DGSQMLGEKK RRLNIEQVKA LERSFELGNK LEPERKMQLA RALGLQPRQI AIWFQNRRAR 120 WKTKQLEKDY DVLKRQFEAL KADNDALKSQ NKNLKNQLLA LKTREPAGPG LINLNKENEG 180 SWSNGSETSN CEVNLNTTST DSTLYLHHQT TKNPVGLPPL GLNHLPQTGS RPDNLQISPK 240 IGNPPASNES FCAMFGGIEE TPDFWPWPEQ QNFN |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 117 | 125 | RRARWKTKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G69780.1 | 3e-57 | HD-ZIP family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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