PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIM98598.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family MYB
Protein Properties Length: 284aa    MW: 32788.8 Da    PI: 9.5428
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIM98598.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.65.9e-0870115346
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 
                       WT+eE + + +a + +  +   +W  +a++++ g++ +++++ +  
       PIM98598.1  70 TWTKEENKMFENALAVFDERtpnRWFHVAAMIP-GKSVYDVINQYKE 115
                      6********************************.*********9975 PP
2Myb_DNA-binding36.88.8e-12168212347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ + +++G+g+W+ I+r +   +t+ q+ s+ qky
       PIM98598.1 168 PWTEDEHRLFLLGLEKYGKGDWRNISRNFVISKTPTQVASHAQKY 212
                      7*****************************789***********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    
MQSCFLKHRI IINYSKIPTL FFFPLFPPSA YPILLHPMEL NSQFNKILTL ETLCPTSNPS  60
WFIQQGKITT WTKEENKMFE NALAVFDERT PNRWFHVAAM IPGKSVYDVI NQYKELVADV  120
SDIEAGLVPI PGYMPASSFM FELSDYRSFD VCRKKARTCD QERKKGIPWT EDEHRLFLLG  180
LEKYGKGDWR NISRNFVISK TPTQVASHAQ KYYLRQKLSG GKDKRRPSIH DITTLHLNKT  240
SSSCDGKLPL LQKSNEQKML MDRYHNNNGA SMVFNAVSSP CLYT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153165RKKARTCDQERKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.12e-81MYB family protein