PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PIM98273.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 195aa MW: 21381.8 Da PI: 9.4115 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.9 | 4.1e-09 | 1 | 18 | 10 | 27 |
GGTS--TTTTT-SS-SSS CS zf-CCCH 10 artGtCkyGdrCkFaHgp 27 +rtG+Ck+G++Ck++H++ PIM98273.1 1 MRTGICKFGASCKYHHPK 18 8***************96 PP | |||||||
2 | zf-CCCH | 31.1 | 4e-10 | 62 | 87 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++f tG+Ck+G CkF+H++ PIM98273.1 62 GEKECSYFIMTGQCKFGVMCKFHHPQ 87 6789********************97 PP | |||||||
3 | zf-CCCH | 31.2 | 3.8e-10 | 156 | 182 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rt Ck+G+ Ck++H+p PIM98273.1 156 PGQPECQYYLRTWDCKFGAACKYHHPP 182 5789*********************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 195 aa Download sequence |
MRTGICKFGA SCKYHHPKHG VGSSAPVTLN VCGYPLRLVR LFENLGSCSI FYSITYESLL 60 QGEKECSYFI MTGQCKFGVM CKFHHPQPAG LEVPAPTLAR GPGPLAAQPT VGAGPVYGIM 120 LLSPLATAYT GPYLSITSSA GLSSSSQKGR AFPERPGQPE CQYYLRTWDC KFGAACKYHH 180 PPELGFRRLR WRSRL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G16540.2 | 2e-32 | C3H family protein |