PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIM97354.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family GRAS
Protein Properties Length: 556aa    MW: 61632.9 Da    PI: 5.2284
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIM97354.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS300.44.5e-921965552374
        GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 v+ L++ Ae++++++++  + +Larl+++ ++ +g+p+qR+a+yf+eAL++ l+      +   +  ++++++ +++++a+k+fs +sPi+ fs +taN
  PIM97354.1 196 VDELIRLAECFETHSFQIGHVILARLNQRlRAATGKPLQRAAFYFKEALQSLLTV-----STRPSHYPANTYEIVQTIKAQKTFSSISPIPMFSSFTAN 289
                 678*************************989999*******************98.....4444556666777************************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                 qa+lea++g+++vH+iDfdi+ G++W++++++La+++    + pp lRi +++++e   + e + + e+L++fA+el+++f+++++  +++e l+++++
  PIM97354.1 290 QAVLEALDGSTHVHVIDFDIGLGGHWASFMKELADKAdlrkSAPPLLRISALVPEE--YAAESRLITENLTQFARELNIRFDIDFISIRTFEYLSFKSI 386
                 **********************************877776699***********66..99999************************************ PP

        GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsl.eaklpres..eerikvEre 288
                 ++  gE++aV l+ +++r +          + +++ ++++sP+vvv+v+ e  ++++++s+ + +++ le+ys+l++sl +a++  +   ++++++E  
  PIM97354.1 387 KFMDGEKVAVLLSPAIFRHV---------GTGFVNDLRRISPHVVVHVDIEgqMELGTSSYRQAVIDGLEFYSTLLESLeAANFNGAGggDWMKSIETY 476
                 ******************98.........357*****************9955666***********************666665544789******** PP

        GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +l ++i + v + g++          Wre+l +aG+++v ls++a  qa++llr+v+++g++v +++++++l+W+drpLv++SaWr
  PIM97354.1 477 VLYPKILETVEAVGRR-------GTPWREALVAAGLRQVGLSQFADFQAECLLRRVQVRGFNVVKRQAEMLLCWHDRPLVATSAWR 555
                 **************98.......789***********************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    
MKVPFPGNNQ NNTKPVLNCN ITTALVTTLP ATTVPTATIA ATTTPSSSPY EPKSVLELRG  60
SPSPVAEKPS SNNNTSDILA DPLQLEDHVL TNLPLYDWDS LMREFGLQDD STSASKPFPQ  120
IISQSEIQIT QSEYSNLPEL APVDSAQFLP ADFGLLSEIP IYSTAPLNHN SNSINAFEGL  180
PGDLNTGNWN VGFDYVDELI RLAECFETHS FQIGHVILAR LNQRLRAATG KPLQRAAFYF  240
KEALQSLLTV STRPSHYPAN TYEIVQTIKA QKTFSSISPI PMFSSFTANQ AVLEALDGST  300
HVHVIDFDIG LGGHWASFMK ELADKADLRK SAPPLLRISA LVPEEYAAES RLITENLTQF  360
ARELNIRFDI DFISIRTFEY LSFKSIKFMD GEKVAVLLSP AIFRHVGTGF VNDLRRISPH  420
VVVHVDIEGQ MELGTSSYRQ AVIDGLEFYS TLLESLEAAN FNGAGGGDWM KSIETYVLYP  480
KILETVEAVG RRGTPWREAL VAAGLRQVGL SQFADFQAEC LLRRVQVRGF NVVKRQAEML  540
LCWHDRPLVA TSAWRY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-129GRAS family protein