PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIM97144.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | C3H | ||||||||
Protein Properties | Length: 551aa MW: 59928.9 Da PI: 7.6077 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.7 | 1.7e-07 | 129 | 149 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg PIM97144.1 129 PCPDFRK-GACRRGDMCEYAHG 149 8******.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 551 aa Download sequence |
MNNISCGSVG QCNLRVSISA SDASSPLLSS SPESRSPCSP SDSVSSPAAP KFGDSVANSV 60 SEKKQYPVDP SLPDIRNSIY STDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP 120 RKYHYSCVPC PDFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTS CARQVCFFAH 180 TQEELRPLYI STGSGVPSPR SAASAASFMD MAAALSLLPG SPTSQSVMSP SPFNQTMSPT 240 ANGMSHSSAP WPQPNVPTLH LPGSNLQSSR LRSSLSARDI PPEDLNVLED YDAQQLVMND 300 LACFSQPRPN SAMLNCSGRS KTTLTPSNLE ELFSAEITSS PRFSDQAAAF GVFSPSHKSA 360 VLNQFQQQQS ILPPINTKVF SPRNVEHPLL QASFGVSSPR MSSPRSLDPA SPMSARLSAF 420 AQRERQQQHM RSLSSRDLGS NRAPIVGSPT TAWSKWGSPN GKADWSVGGD DQGRLKRSSS 480 YEVKNDGEEP DLSWVHSLVK ESPPEMNKPA ASTSGAAPSG ECLKSNSQTD PVDHSVLGAW 540 LEQMQLDQLV V |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 1e-179 | C3H family protein |