PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIM97144.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family C3H
Protein Properties Length: 551aa    MW: 59928.9 Da    PI: 7.6077
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIM97144.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.7e-07129149526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C++f++ G C++Gd C +aHg
  PIM97144.1 129 PCPDFRK-GACRRGDMCEYAHG 149
                 8******.*************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    
MNNISCGSVG QCNLRVSISA SDASSPLLSS SPESRSPCSP SDSVSSPAAP KFGDSVANSV  60
SEKKQYPVDP SLPDIRNSIY STDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP  120
RKYHYSCVPC PDFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTS CARQVCFFAH  180
TQEELRPLYI STGSGVPSPR SAASAASFMD MAAALSLLPG SPTSQSVMSP SPFNQTMSPT  240
ANGMSHSSAP WPQPNVPTLH LPGSNLQSSR LRSSLSARDI PPEDLNVLED YDAQQLVMND  300
LACFSQPRPN SAMLNCSGRS KTTLTPSNLE ELFSAEITSS PRFSDQAAAF GVFSPSHKSA  360
VLNQFQQQQS ILPPINTKVF SPRNVEHPLL QASFGVSSPR MSSPRSLDPA SPMSARLSAF  420
AQRERQQQHM RSLSSRDLGS NRAPIVGSPT TAWSKWGSPN GKADWSVGGD DQGRLKRSSS  480
YEVKNDGEEP DLSWVHSLVK ESPPEMNKPA ASTSGAAPSG ECLKSNSQTD PVDHSVLGAW  540
LEQMQLDQLV V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-179C3H family protein