PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021690996.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
Family C3H
Protein Properties Length: 495aa    MW: 55492.2 Da    PI: 5.6599
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021690996.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH413.3e-13149171426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     e C f+++tGtCk+G++CkF+H+
  XP_021690996.1 149 EDCAFYMKTGTCKFGSNCKFNHP 171
                     89********************9 PP

2zf-CCCH32.41.5e-10195219327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     + +C++++rtG CkyG  C+++H++
  XP_021690996.1 195 QTECKYYLRTGGCKYGKACRYNHSR 219
                     578********************95 PP

3zf-CCCH39.59.1e-13247271226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++++r+G CkyG +C+F+H+
  XP_021690996.1 247 GERECPYYMRNGSCKYGVNCRFNHP 271
                     5799********************9 PP

4zf-CCCH24.64.3e-08381407127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+++++tG Ck+ ++Ck++H++
  XP_021690996.1 381 PGQPECSYYLKTGGCKFKSNCKYHHPK 407
                     5789*********************96 PP

5zf-CCCH32.91.1e-10431452526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++++r+G+Ck+G+ CkF H+
  XP_021690996.1 431 ICSYYSRYGICKFGPACKFDHS 452
                     7********************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    
MEYSEASNFL TNTADTNPKL GFQSSSNADS DSDQTLELRK KLERKPLYLT EAGVVFEEAA  60
PDIAVVEKVY EKLEKQLHLK EDEEDKHSIE WNQDDYFNSV ESIDGEEHNR YDKEDNDNND  120
EKLDDEAEEK NESINGNRRH QYPVRPEAED CAFYMKTGTC KFGSNCKFNH PVRRKSQATK  180
EKVKEREEAA ERSDQTECKY YLRTGGCKYG KACRYNHSRA KTPVLPAKTT VFPVLELNFL  240
GLPIRLGERE CPYYMRNGSC KYGVNCRFNH PDPTAAGGSD PPSAFSNGGA AALQSSSQSS  300
VASWSLPRGL NEAAPFPIMF SPTQGVPSQN PEWNGYQAPA FPPERRSIHP GSAYVISNPA  360
TDTNVYAHQQ QMTFDEYPER PGQPECSYYL KTGGCKFKSN CKYHHPKNQI PKSPPCALSD  420
KGLPLRPGQH ICSYYSRYGI CKFGPACKFD HSIQPASMTG SAEDQGTPFS DSLAKDESRM  480
SETGNQSDTA IQQPE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-127C3H family protein