PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021690996.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | C3H | ||||||||
Protein Properties | Length: 495aa MW: 55492.2 Da PI: 5.6599 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 41 | 3.3e-13 | 149 | 171 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C f+++tGtCk+G++CkF+H+ XP_021690996.1 149 EDCAFYMKTGTCKFGSNCKFNHP 171 89********************9 PP | |||||||
2 | zf-CCCH | 32.4 | 1.5e-10 | 195 | 219 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C++++rtG CkyG C+++H++ XP_021690996.1 195 QTECKYYLRTGGCKYGKACRYNHSR 219 578********************95 PP | |||||||
3 | zf-CCCH | 39.5 | 9.1e-13 | 247 | 271 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G CkyG +C+F+H+ XP_021690996.1 247 GERECPYYMRNGSCKYGVNCRFNHP 271 5799********************9 PP | |||||||
4 | zf-CCCH | 24.6 | 4.3e-08 | 381 | 407 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+ ++Ck++H++ XP_021690996.1 381 PGQPECSYYLKTGGCKFKSNCKYHHPK 407 5789*********************96 PP | |||||||
5 | zf-CCCH | 32.9 | 1.1e-10 | 431 | 452 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++++r+G+Ck+G+ CkF H+ XP_021690996.1 431 ICSYYSRYGICKFGPACKFDHS 452 7********************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 495 aa Download sequence |
MEYSEASNFL TNTADTNPKL GFQSSSNADS DSDQTLELRK KLERKPLYLT EAGVVFEEAA 60 PDIAVVEKVY EKLEKQLHLK EDEEDKHSIE WNQDDYFNSV ESIDGEEHNR YDKEDNDNND 120 EKLDDEAEEK NESINGNRRH QYPVRPEAED CAFYMKTGTC KFGSNCKFNH PVRRKSQATK 180 EKVKEREEAA ERSDQTECKY YLRTGGCKYG KACRYNHSRA KTPVLPAKTT VFPVLELNFL 240 GLPIRLGERE CPYYMRNGSC KYGVNCRFNH PDPTAAGGSD PPSAFSNGGA AALQSSSQSS 300 VASWSLPRGL NEAAPFPIMF SPTQGVPSQN PEWNGYQAPA FPPERRSIHP GSAYVISNPA 360 TDTNVYAHQQ QMTFDEYPER PGQPECSYYL KTGGCKFKSN CKYHHPKNQI PKSPPCALSD 420 KGLPLRPGQH ICSYYSRYGI CKFGPACKFD HSIQPASMTG SAEDQGTPFS DSLAKDESRM 480 SETGNQSDTA IQQPE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 1e-127 | C3H family protein |