PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021689229.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | C3H | ||||||||
Protein Properties | Length: 400aa MW: 43693.1 Da PI: 8.2799 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 39.1 | 1.2e-12 | 4 | 27 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k elCr+f+r G C+yG+rCkF H+ XP_021689229.1 4 KKELCRNFQR-GSCQYGERCKFLHV 27 78********.*************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence |
MPIKKELCRN FQRGSCQYGE RCKFLHVTPQ QQQKPNNNAF GFGSQQQQQQ NRFSNPFGFG 60 VQSKSPNDFA NKQQQFKPFE NKWTRFSPIS NGGTSSRQPD NQPQAVNHKC TDPDSCKRLI 120 VEDFEHEKPL WKLTCYGHSK NGPCDIVGDI SYEELRAAAY DDAKHGLSLQ SIVERERNLL 180 NSKLTEFENL LRNPYVAPQN SALSQSTFPG VTPNAISTTG ENNAPPAVSS FSQLGASLNM 240 GSKTRPSAPL NNPFGQPNLF SNSSQSFSTF GIRPSASSNN AFGQPNFFSN ASQTSSAFGT 300 NSFAPANAAG FSSRTINNQS SPFSSAVSTE MTNSSRSSAQ PLIISDAPNS ASNAVEPVTK 360 HIQSVNGMQR GTVSGDASIW LKENWIPGEI PEEAPPDQYI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75340.1 | 1e-87 | C3H family protein |