PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021686974.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 466aa MW: 50735.6 Da PI: 8.08

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021686974.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.5	3.4e-11	101	125	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd+CkF H+ XP_021686974.1 101 GEKDCAYYMLTRTCKFGDSCKFDHP 125 7889********************8 PP
2	zf-CCCH	36.2	1e-11	152	177	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++f++t CkyG++CkF+H++ XP_021686974.1 152 GQPDCPYFLKTQRCKYGSKCKFNHPK 177 5799********************96 PP
3	zf-CCCH	35.7	1.5e-11	201	225	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C f+++tG Ck+G +CkF+H++ XP_021686974.1 201 EPQCAFYMKTGKCKFGVTCKFHHPK 225 678********************96 PP
4	zf-CCCH	36.6	7.5e-12	283	304	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+f+++tG CkyG++C+++H+ XP_021686974.1 283 DCPFYLKTGSCKYGATCRYNHP 304 7********************9 PP
5	zf-CCCH	41.6	2.1e-13	363	387	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C+++++tG+Ck+G+rCkF+H+ XP_021686974.1 363 GQTECDYYMKTGECKFGERCKFHHP 387 6789********************8 PP
6	zf-CCCH	36.8	6.5e-12	419	440	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+f++ tGtCk+G++CkF H+p XP_021686974.1 419 CPFYMTTGTCKFGATCKFDHPP 440 ********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence
MYLTQSEILR YSADRGITSA AASTASHLAP WTPPPGVDVS TAVEPLLAGI KRSNEVLHHL 60 TILGVHTLXG QSEAWYSTKS LAKRSRFESA SNLPMYPQRP GEKDCAYYML TRTCKFGDSC 120 KFDHPIWVPE GGIPNWTEVP IATIESLPER LGQPDCPYFL KTQRCKYGSK CKFNHPKDKL 180 ALFQDGLENT DVSALPERPS EPQCAFYMKT GKCKFGVTCK FHHPKDIQIL LGQENGNAVQ 240 TESAVKMDEV TGAGHVSVVN SISFDPASFH NSKGLPIRPG ELDCPFYLKT GSCKYGATCR 300 YNHPDRNAIS PPAAAMGHSI VATLAANLNF GVIPAASIYQ TVDPRLAYST LGVGPIVYPQ 360 RPGQTECDYY MKTGECKFGE RCKFHHPIDR STVIAMQAQE QNVKLTLAGL PRREGAVHCP 420 FYMTTGTCKF GATCKFDHPP LTAIAASQGT STSAGVDLNG AVAGTL

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence

MYLTQSEILR YSADRGITSA AASTASHLAP WTPPPGVDVS TAVEPLLAGI KRSNEVLHHL  60
TILGVHTLXG QSEAWYSTKS LAKRSRFESA SNLPMYPQRP GEKDCAYYML TRTCKFGDSC  120
KFDHPIWVPE GGIPNWTEVP IATIESLPER LGQPDCPYFL KTQRCKYGSK CKFNHPKDKL  180
ALFQDGLENT DVSALPERPS EPQCAFYMKT GKCKFGVTCK FHHPKDIQIL LGQENGNAVQ  240
TESAVKMDEV TGAGHVSVVN SISFDPASFH NSKGLPIRPG ELDCPFYLKT GSCKYGATCR  300
YNHPDRNAIS PPAAAMGHSI VATLAANLNF GVIPAASIYQ TVDPRLAYST LGVGPIVYPQ  360
RPGQTECDYY MKTGECKFGE RCKFHHPIDR STVIAMQAQE QNVKLTLAGL PRREGAVHCP  420
FYMTTGTCKF GATCKFDHPP LTAIAASQGT STSAGVDLNG AVAGTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	0.0	C3H family protein