PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021685559.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 506aa MW: 55371.6 Da PI: 8.0351

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021685559.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.5	7.2e-11	160	184	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd+CkF H+ XP_021685559.1 160 GEKDCAHYMLTRTCKFGDSCKFDHP 184 7889********************8 PP
2	zf-CCCH	35.6	1.6e-11	212	236	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C++f++t CkyG++CkF+H+ XP_021685559.1 212 GQPDCPYFLKTQRCKYGSKCKFNHP 236 5799********************8 PP
3	zf-CCCH	36.8	6.8e-12	261	285	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C f+++tG Ck+G++CkF+H++ XP_021685559.1 261 EPTCAFYMKTGKCKFGATCKFHHPK 285 689********************96 PP
4	zf-CCCH	36.6	7.8e-12	338	363	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG++C+++H+ XP_021685559.1 338 PGEVDCPFYLKTGSCKYGATCRYNHP 363 57899********************8 PP
5	zf-CCCH	40.7	4e-13	422	446	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C+++++tG+Ck+G+rC+F+H+ XP_021685559.1 422 GQTECDYYMKTGECKFGERCRFHHP 446 6789********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence
MANKLYGYSS SYGAAPPSSA AAAGYTPRSV TDSYLPETVM GRYLGAFSDS DPSKYSVTSM 60 YLTQSEALRY SADRGITSAA ASASSHLAPW TPPPGVDVSA AVEPLIAGIK RSTEVLYHPT 120 IFGAHNSIGQ SEAWYSTNSL AKRSRFESAS NLPIYPQRPG EKDCAHYMLT RTCKFGDSCK 180 FDHPIWVPEG GIPNWKEVPL VATIESLPER LGQPDCPYFL KTQRCKYGSK CKFNHPNDKL 240 ATFQDGLENT DVSVLPERPS EPTCAFYMKT GKCKFGATCK FHHPKDIQIL LGQENGNTWQ 300 TESAVNIDEI AGHFNVANAS ISLTPALFHN SKGLPIRPGE VDCPFYLKTG SCKYGATCRY 360 NHPHRNAINP PAAAIGHSIV ATPAANLNIG VVPAASIFQT LDPRLAHSTL GVGPTVYPQR 420 PGQTECDYYM KTGECKFGER CRFHHPIDRS ASTAKQAQEQ TVKLTLAGLP RREPHCHGDC 480 IYVVLTIQHL TSRCHYSLCF CDMKDS

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence

MANKLYGYSS SYGAAPPSSA AAAGYTPRSV TDSYLPETVM GRYLGAFSDS DPSKYSVTSM  60
YLTQSEALRY SADRGITSAA ASASSHLAPW TPPPGVDVSA AVEPLIAGIK RSTEVLYHPT  120
IFGAHNSIGQ SEAWYSTNSL AKRSRFESAS NLPIYPQRPG EKDCAHYMLT RTCKFGDSCK  180
FDHPIWVPEG GIPNWKEVPL VATIESLPER LGQPDCPYFL KTQRCKYGSK CKFNHPNDKL  240
ATFQDGLENT DVSVLPERPS EPTCAFYMKT GKCKFGATCK FHHPKDIQIL LGQENGNTWQ  300
TESAVNIDEI AGHFNVANAS ISLTPALFHN SKGLPIRPGE VDCPFYLKTG SCKYGATCRY  360
NHPHRNAINP PAAAIGHSIV ATPAANLNIG VVPAASIFQT LDPRLAHSTL GVGPTVYPQR  420
PGQTECDYYM KTGECKFGER CRFHHPIDRS ASTAKQAQEQ TVKLTLAGLP RREPHCHGDC  480
IYVVLTIQHL TSRCHYSLCF CDMKDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-175	C3H family protein