PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021685552.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
Family C3H
Protein Properties Length: 519aa    MW: 56401.6 Da    PI: 8.1732
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021685552.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.47.5e-11160184226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C +++ t tCk+Gd+CkF H+
  XP_021685552.1 160 GEKDCAHYMLTRTCKFGDSCKFDHP 184
                     7889********************8 PP

2zf-CCCH35.61.6e-11212236226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C++f++t  CkyG++CkF+H+
  XP_021685552.1 212 GQPDCPYFLKTQRCKYGSKCKFNHP 236
                     5799********************8 PP

3zf-CCCH36.77e-12261285327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C f+++tG Ck+G++CkF+H++
  XP_021685552.1 261 EPTCAFYMKTGKCKFGATCKFHHPK 285
                     689********************96 PP

4zf-CCCH36.58e-12338363126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C+f+++tG CkyG++C+++H+
  XP_021685552.1 338 PGEVDCPFYLKTGSCKYGATCRYNHP 363
                     57899********************8 PP

5zf-CCCH40.64.1e-13413437226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++ +C+++++tG+Ck+G+rC+F+H+
  XP_021685552.1 413 GQTECDYYMKTGECKFGERCRFHHP 437
                     6789********************8 PP

6zf-CCCH35.32e-11469490627
                     -SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                     C+++++t tCkyG++CkF H+p
  XP_021685552.1 469 CPYYMKTSTCKYGATCKFDHPP 490
                     ********************96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    
MANKLYGYSS SYGAAPPSSA AAAGYTPRSV TDSYLPETVM GRYLGAFSDS DPSKYSVTSM  60
YLTQSEALRY SADRGITSAA ASASSHLAPW TPPPGVDVSA AVEPLIAGIK RSTEVLYHPT  120
IFGAHNSIGQ SEAWYSTNSL AKRSRFESAS NLPIYPQRPG EKDCAHYMLT RTCKFGDSCK  180
FDHPIWVPEG GIPNWKEVPL VATIESLPER LGQPDCPYFL KTQRCKYGSK CKFNHPNDKL  240
ATFQDGLENT DVSVLPERPS EPTCAFYMKT GKCKFGATCK FHHPKDIQIL LGQENGNTWQ  300
TESAVNIDEI AGHFNVANAS ISLTPALFHN SKGLPIRPGE VDCPFYLKTG SCKYGATCRY  360
NHPHRNGHSI VATPAANLNI GVVPAASIFQ TLDPRLAHST LGVGPTVYPQ RPGQTECDYY  420
MKTGECKFGE RCRFHHPIDR SASTAKQAQE QTVKLTLAGL PRREGAVHCP YYMKTSTCKY  480
GATCKFDHPP PGEVMTIAAS HRTSTSTGVD VSGAEAGTP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0C3H family protein