PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021685547.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 526aa MW: 56945.2 Da PI: 8.1732

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021685547.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.4	7.6e-11	160	184	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd+CkF H+ XP_021685547.1 160 GEKDCAHYMLTRTCKFGDSCKFDHP 184 7889********************8 PP
2	zf-CCCH	35.5	1.6e-11	212	236	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C++f++t CkyG++CkF+H+ XP_021685547.1 212 GQPDCPYFLKTQRCKYGSKCKFNHP 236 5799********************8 PP
3	zf-CCCH	36.7	7.1e-12	259	283	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C f+++tG Ck+G++CkF+H++ XP_021685547.1 259 EPTCAFYMKTGKCKFGATCKFHHPK 283 689********************96 PP
4	zf-CCCH	36.5	8.2e-12	336	361	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG++C+++H+ XP_021685547.1 336 PGEVDCPFYLKTGSCKYGATCRYNHP 361 57899********************8 PP
5	zf-CCCH	40.6	4.2e-13	420	444	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C+++++tG+Ck+G+rC+F+H+ XP_021685547.1 420 GQTECDYYMKTGECKFGERCRFHHP 444 6789********************8 PP
6	zf-CCCH	35.2	2e-11	476	497	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++t tCkyG++CkF H+p XP_021685547.1 476 CPYYMKTSTCKYGATCKFDHPP 497 ********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence
MANKLYGYSS SYGAAPPSSA AAAGYTPRSV TDSYLPETVM GRYLGAFSDS DPSKYSVTSM 60 YLTQSEALRY SADRGITSAA ASASSHLAPW TPPPGVDVSA AVEPLIAGIK RSTEVLYHPT 120 IFGAHNSIGQ SEAWYSTNSL AKRSRFESAS NLPIYPQRPG EKDCAHYMLT RTCKFGDSCK 180 FDHPIWVPEG GIPNWKEVPL VATIESLPER LGQPDCPYFL KTQRCKYGSK CKFNHPNDKL 240 ATDGLENTDV SVLPERPSEP TCAFYMKTGK CKFGATCKFH HPKDIQILLG QENGNTWQTE 300 SAVNIDEIAG HFNVANASIS LTPALFHNSK GLPIRPGEVD CPFYLKTGSC KYGATCRYNH 360 PHRNAINPPA AAIGHSIVAT PAANLNIGVV PAASIFQTLD PRLAHSTLGV GPTVYPQRPG 420 QTECDYYMKT GECKFGERCR FHHPIDRSAS TAKQAQEQTV KLTLAGLPRR EGAVHCPYYM 480 KTSTCKYGAT CKFDHPPPGE VMTIAASHRT STSTGVDVSG AEAGTP

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence

MANKLYGYSS SYGAAPPSSA AAAGYTPRSV TDSYLPETVM GRYLGAFSDS DPSKYSVTSM  60
YLTQSEALRY SADRGITSAA ASASSHLAPW TPPPGVDVSA AVEPLIAGIK RSTEVLYHPT  120
IFGAHNSIGQ SEAWYSTNSL AKRSRFESAS NLPIYPQRPG EKDCAHYMLT RTCKFGDSCK  180
FDHPIWVPEG GIPNWKEVPL VATIESLPER LGQPDCPYFL KTQRCKYGSK CKFNHPNDKL  240
ATDGLENTDV SVLPERPSEP TCAFYMKTGK CKFGATCKFH HPKDIQILLG QENGNTWQTE  300
SAVNIDEIAG HFNVANASIS LTPALFHNSK GLPIRPGEVD CPFYLKTGSC KYGATCRYNH  360
PHRNAINPPA AAIGHSIVAT PAANLNIGVV PAASIFQTLD PRLAHSTLGV GPTVYPQRPG  420
QTECDYYMKT GECKFGERCR FHHPIDRSAS TAKQAQEQTV KLTLAGLPRR EGAVHCPYYM  480
KTSTCKYGAT CKFDHPPPGE VMTIAASHRT STSTGVDVSG AEAGTP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	0.0	C3H family protein