PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021685541.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | C3H | ||||||||
Protein Properties | Length: 528aa MW: 57220.5 Da PI: 8.1732 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.4 | 7.6e-11 | 160 | 184 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd+CkF H+ XP_021685541.1 160 GEKDCAHYMLTRTCKFGDSCKFDHP 184 7889********************8 PP | |||||||
2 | zf-CCCH | 35.5 | 1.6e-11 | 212 | 236 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C++f++t CkyG++CkF+H+ XP_021685541.1 212 GQPDCPYFLKTQRCKYGSKCKFNHP 236 5799********************8 PP | |||||||
3 | zf-CCCH | 36.7 | 7.1e-12 | 261 | 285 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C f+++tG Ck+G++CkF+H++ XP_021685541.1 261 EPTCAFYMKTGKCKFGATCKFHHPK 285 689********************96 PP | |||||||
4 | zf-CCCH | 36.5 | 8.2e-12 | 338 | 363 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG++C+++H+ XP_021685541.1 338 PGEVDCPFYLKTGSCKYGATCRYNHP 363 57899********************8 PP | |||||||
5 | zf-CCCH | 40.6 | 4.2e-13 | 422 | 446 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C+++++tG+Ck+G+rC+F+H+ XP_021685541.1 422 GQTECDYYMKTGECKFGERCRFHHP 446 6789********************8 PP | |||||||
6 | zf-CCCH | 35.2 | 2e-11 | 478 | 499 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++t tCkyG++CkF H+p XP_021685541.1 478 CPYYMKTSTCKYGATCKFDHPP 499 ********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 528 aa Download sequence |
MANKLYGYSS SYGAAPPSSA AAAGYTPRSV TDSYLPETVM GRYLGAFSDS DPSKYSVTSM 60 YLTQSEALRY SADRGITSAA ASASSHLAPW TPPPGVDVSA AVEPLIAGIK RSTEVLYHPT 120 IFGAHNSIGQ SEAWYSTNSL AKRSRFESAS NLPIYPQRPG EKDCAHYMLT RTCKFGDSCK 180 FDHPIWVPEG GIPNWKEVPL VATIESLPER LGQPDCPYFL KTQRCKYGSK CKFNHPNDKL 240 ATFQDGLENT DVSVLPERPS EPTCAFYMKT GKCKFGATCK FHHPKDIQIL LGQENGNTWQ 300 TESAVNIDEI AGHFNVANAS ISLTPALFHN SKGLPIRPGE VDCPFYLKTG SCKYGATCRY 360 NHPHRNAINP PAAAIGHSIV ATPAANLNIG VVPAASIFQT LDPRLAHSTL GVGPTVYPQR 420 PGQTECDYYM KTGECKFGER CRFHHPIDRS ASTAKQAQEQ TVKLTLAGLP RREGAVHCPY 480 YMKTSTCKYG ATCKFDHPPP GEVMTIAASH RTSTSTGVDV SGAEAGTP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 0.0 | C3H family protein |