PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021684618.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

M-type_MADS

Protein Properties

Length: 383aa MW: 44060.1 Da PI: 6.8729

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021684618.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	48.7	1e-15	11	53	3	45
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i+ +s r tf kR++ +lKK +E S+LC++e+++iif++++k XP_021684618.1 11 IKKESTRMNTFQKRKKSLLKKISEFSILCGVEACLIIFGPKQK 53 889999**********************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MGHSRIKMEL IKKESTRMNT FQKRKKSLLK KISEFSILCG VEACLIIFGP KQKDEQVIKL 60 EATWPSNPDE IKRIINKYKR TDQARRCYHV SDYFADKKKK VDVEISKLHK QIFEANFPIW 120 DVRLDSFLED QLRVLMAQLD EKLEIADKKL DSFHENQVLM DEFASRMLYS SQNMEMNRSN 180 SFRNLTNLHQ LFSDVKPLDA QLPVSCFLPG QSSYMIPSNS NLMENSNSSY SYSTNLQLFS 240 DYHATIPSRN LKDRNNNSCK LDNLQLQLFS DPKPLDVQLP MHFQNMISSP GTSSNSNLLE 300 DLMMMSKDQN IGNQYGDRPI SNIQSISGLP YVPSSWTWGN VMLDNVDAST SNAGSTLQTI 360 LPQMQLPMLS FSDQMNPSQE DNF

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MGHSRIKMEL IKKESTRMNT FQKRKKSLLK KISEFSILCG VEACLIIFGP KQKDEQVIKL  60
EATWPSNPDE IKRIINKYKR TDQARRCYHV SDYFADKKKK VDVEISKLHK QIFEANFPIW  120
DVRLDSFLED QLRVLMAQLD EKLEIADKKL DSFHENQVLM DEFASRMLYS SQNMEMNRSN  180
SFRNLTNLHQ LFSDVKPLDA QLPVSCFLPG QSSYMIPSNS NLMENSNSSY SYSTNLQLFS  240
DYHATIPSRN LKDRNNNSCK LDNLQLQLFS DPKPLDVQLP MHFQNMISSP GTSSNSNLLE  300
DLMMMSKDQN IGNQYGDRPI SNIQSISGLP YVPSSWTWGN VMLDNVDAST SNAGSTLQTI  360
LPQMQLPMLS FSDQMNPSQE DNF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	23	53	KRKKSLLKKISEFSILCGVEACLIIFGPKQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	6e-24	M-type_MADS family protein