PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021683712.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | LBD | ||||||||
Protein Properties | Length: 215aa MW: 23665.5 Da PI: 5.1406 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.4 | 2.9e-39 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++Cv+apyf +q + +f +vhk+FGasnv+kll +lp + r+da+ ++ yeA ar+rdP+yG+v++i++lqqq+++l++e+ XP_021683712.1 7 SCGACKFLRRKCTSECVFAPYFSYDQaATHFLAVHKVFGASNVSKLLLHLPVQSRSDAAITISYEALARMRDPIYGCVAHIFALQQQIASLQEEI 101 6***********************99789****************************************************************** PP DUF260 95 allkee 100 + l+++ XP_021683712.1 102 EILGHQ 107 *99887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence |
MTGPGSSCGA CKFLRRKCTS ECVFAPYFSY DQAATHFLAV HKVFGASNVS KLLLHLPVQS 60 RSDAAITISY EALARMRDPI YGCVAHIFAL QQQIASLQEE IEILGHQMAN LTVGIASHGS 120 SQTTSNPNCE IQICSFQDAI NMQYYQNLPA AQVNNSGYAT GNQSFNSQVN VQLPSLYEWE 180 DLNPFCESHP NPLDRLLEGV DFPYCSWLDS GNNAN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 1e-60 | LBD family protein |