PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021683133.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | C3H | ||||||||
Protein Properties | Length: 885aa MW: 98279.5 Da PI: 8.7211 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.2 | 1e-06 | 177 | 196 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 lC++fa+ G C++G+ C+F H XP_021683133.1 177 LCKDFAA-GRCRRGNHCQFLH 196 9******.************* PP | |||||||
2 | zf-CCCH | 18.5 | 3.5e-06 | 299 | 319 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C+ffa+ G C+ G C+F+H XP_021683133.1 299 VPCKFFAA-GNCRNGKYCRFSH 319 69**9999.************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 885 aa Download sequence |
MTEIDAAFGK MSRSGRRRGS KWDLKEESRI PFDSVHDNAW PGEASLSFHE RESQHGWHSP 60 EGASGNRAKW SVREPLPGRR GSRRDDSIDE DPNKSLKPMP TWDGDENYGT RMSPGLDEWR 120 QQNRHSSPRN EWKRSRRGRS QSRSRSRSRS RSPVCGFGQE SGLCDRSRSR SGLSAQLCKD 180 FAAGRCRRGN HCQFLHQGTQ SYEDGWERHR KTVTSKYTTP HESREYSSGS GRSTDCCNVF 240 LKGDCRRVAC CRFSHHVASN AAAKGSSNEV IRQRNNDRRH RDASLERQGD RETFRAANVP 300 CKFFAAGNCR NGKYCRFSHQ DLAHGSPDRS QDGRHSLVRN TDDPEKLWNV PKWASTSASD 360 TGKLSGHKND TVVAPDQRGS TRSVDGGWGH CLEEDKTLGD RPVEHKMVKS ETALTWKAEN 420 ASDNMLASEQ RACGENWLGD MDMSPEWNYI VTHPKCIDKQ EPALTNCNAS ITQVSGHAHD 480 ATAVMPSLIN ESSAKHQDYN LREVVANALP RDDNSVTGKT ASSHASVYAN IMSAQSFDQN 540 GMNSNVLPLP CLNVVGQGQL TISSSGDNVN PQNQMLLQEG RTINKPDNGE ANASQVNSGV 600 SKTQKVSSEQ LTQLTNISSS LAQLLANGQQ LPHLSVHNNT EISSYANSVA LVKPDSAVTT 660 ESNQKVGLRK QYNPICDNIA PEKHVVNNNP PGFSPNLVRQ KNISDGKPEM PSKSFSPSVV 720 GPPNGGGYNQ YRSLQEPSSK SCQLNEMEPG SNSKVTKENN GAVTEESREL EEDKTAQEND 780 PLENIDGDDK TDEGRKSKDV KGIRAFKFAL VEFVKELLKP TWKEGQLSKD AYKNIVKKVV 840 DKVIGSMQGA SIPQTPEKIQ HYLSFSKPRL TKLVQAYVEK FQKDK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 143 | 151 | RSRSRSRSR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 2e-15 | C3H family protein |