PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021682981.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | C3H | ||||||||
Protein Properties | Length: 669aa MW: 73387.5 Da PI: 5.184 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.5 | 1.9e-07 | 278 | 298 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+++++ G C++Gd C F+Hg XP_021682981.1 278 PCPDHRK-GACRRGDLCEFSHG 298 8******.*************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 669 aa Download sequence |
MDNSIGTVEA EHSFSVLLEY AADNDVEGFK RTVCDESEIM EVGLWYGHQR VLKRGVLEHR 60 TPLMVAAKYG SVEVLKLILS LPEVDVNFSC GPDQSTALHC AASGGSVNVI DAIKLLLLAG 120 ADPNSTDANG HRPIDVIVAS PNFPYLKFAL EKLLKNDGSA SQSDLQVSTN CLRSSLPSIS 180 LLSEEGSSFS ISGSILSPIT SKINDVHISS AKKEYHVDPS VPDITNSIYA TDEFRMFSFK 240 IQPCSRAYSH DWTECPFVHP GENARRRDPR RFHYSCVPCP DHRKGACRRG DLCEFSHGIF 300 ECWLHPAQYR TRLCKDGTSC IRRVCFFAHT SDELRPLYAS TGAAVPSPQA AAVDFTAALN 360 LLSGSPSAVS AVSPLSFTPP MSASRNDLRL SMAWPQQNIL NLKILSNNLQ ANRLRTSLNA 420 RDIPSEEFNG IQDFELQQLR LLNELSCISQ PYHNSSSANL KQLNASVLDR LLSYEVSSPQ 480 NIYQLGAAPV FFPSYKPAVL NEFQQQSMLS PIKTGVFSPK NVDYSPFQAS FDCSSPMKML 540 PQLNEPTSPL SSQLSTLARS EKLQLQLGSL SSQEIGSNLT YNGVNVDWSI REDEVGLLQK 600 LYSNGNCGEE PDVSWVQSVL KDSPSETEEK AISVSGSLDD SSSNPQSESS DHVACQAWLE 660 GLKLDQIVA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12850.1 | 0.0 | C3H family protein |