PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021682553.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 705aa MW: 76538.9 Da PI: 6.1673

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021682553.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.7	1.5e-06	278	298	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg XP_021682553.1 278 PCPEFRK-GSCRQGDACEYAHG 298 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 705 aa Download sequence
MCSGSKTTTH SGFIMEKNEF QRQDGFCCDL SFLLELSASN DLIGFKREIE GGRDVDELGL 60 WYGRRIGSKK MGYEERTPLM IAALYGSKDV LKYILEMGCV DVNRCCGSDG ATALHCAAAG 120 GSVSSLEVVK LLLDASADPN TVDANGNNAS DLLVPFVSSG SNSRRKALEL VLKGGCYSDE 180 SCVLANQNPN EIDRQEQQEV STPIFSKDGT EKKEYPVDLT LPDIKNGIYG TDEFRMYTFK 240 VKPCSRAYSH DWTECPFVHP GENARRRDPR KYHYSCVPCP EFRKGSCRQG DACEYAHGIF 300 ECWLHPAQYR TRLCKDETSC ARRVCFFAHK PEELRPLYAS TGSAVPSPRS FSANVSARDI 360 GSISPLALGS PSILIPATST PPMTPSGSSS PMGGWPNQSN IIPPTLQLPG SRLKSALSAR 420 DLDLDMELLG LDSHHRWQQQ LMDEISGLSS PSSWNNGLST GSAFAVSGDR TIELNRLGRV 480 KPTNLEDIFG SLDPSILPQL QGLSVDASAS QLQSPKGIQM HQNINQKLRP SYPTNFSSSP 540 VRTSSFGIDA SGAAAAAVLN SRSAAFAKRS QSFIERSAVN RHTGFSSPTS SATTMPSNLS 600 DWGSPDGKLD WGVQGEELNK LRKSASFGIR SNGSSLATAA VSAPAILYEP DVSWVQSLVK 660 DTPPLNSGHL GVEEQQQQCH LNTGGSEMLP AWVEQLCIEQ EQMVA

Sequence ? help Back to Top

Protein Sequence Length: 705 aa Download sequence

MCSGSKTTTH SGFIMEKNEF QRQDGFCCDL SFLLELSASN DLIGFKREIE GGRDVDELGL  60
WYGRRIGSKK MGYEERTPLM IAALYGSKDV LKYILEMGCV DVNRCCGSDG ATALHCAAAG  120
GSVSSLEVVK LLLDASADPN TVDANGNNAS DLLVPFVSSG SNSRRKALEL VLKGGCYSDE  180
SCVLANQNPN EIDRQEQQEV STPIFSKDGT EKKEYPVDLT LPDIKNGIYG TDEFRMYTFK  240
VKPCSRAYSH DWTECPFVHP GENARRRDPR KYHYSCVPCP EFRKGSCRQG DACEYAHGIF  300
ECWLHPAQYR TRLCKDETSC ARRVCFFAHK PEELRPLYAS TGSAVPSPRS FSANVSARDI  360
GSISPLALGS PSILIPATST PPMTPSGSSS PMGGWPNQSN IIPPTLQLPG SRLKSALSAR  420
DLDLDMELLG LDSHHRWQQQ LMDEISGLSS PSSWNNGLST GSAFAVSGDR TIELNRLGRV  480
KPTNLEDIFG SLDPSILPQL QGLSVDASAS QLQSPKGIQM HQNINQKLRP SYPTNFSSSP  540
VRTSSFGIDA SGAAAAAVLN SRSAAFAKRS QSFIERSAVN RHTGFSSPTS SATTMPSNLS  600
DWGSPDGKLD WGVQGEELNK LRKSASFGIR SNGSSLATAA VSAPAILYEP DVSWVQSLVK  660
DTPPLNSGHL GVEEQQQQCH LNTGGSEMLP AWVEQLCIEQ EQMVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	0.0	C3H family protein