PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021679538.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | C3H | ||||||||
Protein Properties | Length: 481aa MW: 50998.9 Da PI: 8.4472 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.3 | 4.5e-12 | 50 | 74 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG+C yG+rC+F+H++ XP_021679538.1 50 EADCIYYLRTGFCGYGARCRFNHPR 74 689********************96 PP | |||||||
2 | zf-CCCH | 37.4 | 4.1e-12 | 96 | 120 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++Ck++H++ XP_021679538.1 96 QPVCQYYMRTGMCKFGASCKYHHPK 120 689********************96 PP | |||||||
3 | zf-CCCH | 34.3 | 3.9e-11 | 141 | 166 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ +tG+Ck+G++CkF+H++ XP_021679538.1 141 GERECTYYVKTGHCKFGATCKFHHPQ 166 789*********************97 PP | |||||||
4 | zf-CCCH | 38.7 | 1.7e-12 | 306 | 332 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G++C+++H+p XP_021679538.1 306 PGQPECQYYMKTGDCKFGSSCRYHHPP 332 5789*********************97 PP | |||||||
5 | zf-CCCH | 28.3 | 3e-09 | 355 | 378 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C ++ + G+Ck+G+ CkF H++ XP_021679538.1 355 PTCTHYTQRGQCKFGPACKFDHPM 378 78********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence |
MDRYGRTQEG SQSDPSPEWT APGPETGFEE GVWQLGLGER ESGYPERPNE ADCIYYLRTG 60 FCGYGARCRF NHPRDRGAVI GATRAGAGEF PERVGQPVCQ YYMRTGMCKF GASCKYHHPK 120 QGGGSVSPVS LNYYGYPLRQ GERECTYYVK TGHCKFGATC KFHHPQPANL QIPAQSVAPQ 180 VAPLPPPVAA STLYPTVQSP SVPSTQQYGI VVARPSLLPG SYVQGPYGPM VLSPGVVSYP 240 SWSSYPAPVS PVASHSTQPG VVSGSVYGIT QLSPSASAYT GIYQPISTSI GPSSSSQKEH 300 SFPERPGQPE CQYYMKTGDC KFGSSCRYHH PPELIAPKTT VLLSPIGLPL RPGAPTCTHY 360 TQRGQCKFGP ACKFDHPMGT LSYSPSASSL ADMPVAPYAV GSSIGTLAPS SSSSELRPEL 420 LSGSSKDSSS TRMSSSSSTS SVLVGSTFSK SGPVPYSSVQ QSSQSSGHST GSSSKEAHTS 480 S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06410.1 | 1e-146 | C3H family protein |