PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021679295.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | C3H | ||||||||
Protein Properties | Length: 265aa MW: 29474.4 Da PI: 8.4826 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.1 | 3.6e-09 | 10 | 35 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+ C f+ G Ck G++C+FaHg+ XP_021679295.1 10 FKTRMCAKFRT-GNCKNGENCNFAHGM 35 699******99.*************95 PP | |||||||
2 | zf-CCCH | 30.1 | 8.2e-10 | 73 | 96 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k++lC+ f+ + +C+yGdrC+F H XP_021679295.1 73 KMKLCKKFYNGEECPYGDRCNFLH 96 789*******66************ PP | |||||||
3 | zf-CCCH | 42.5 | 1e-13 | 157 | 183 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC + tG+C++G++C+FaHg+ XP_021679295.1 157 WKTKLCTKWETTGQCPFGEKCHFAHGQ 183 8************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence |
IYKGTTNIFF KTRMCAKFRT GNCKNGENCN FAHGMQDLRQ PPPNWQELVG GGVRAEEDRS 60 AGNWDDDQRI IHKMKLCKKF YNGEECPYGD RCNFLHEDPS KFRDDIGRFR ESSAISIGTT 120 GQPMVPGIGG SNATEVNKPV INSCSDAFRA NMKPVYWKTK LCTKWETTGQ CPFGEKCHFA 180 HGQAELKVPG GRAEGENAGS ILTKPPVLAN NASPSTTASV PNVIEEAQSK KCLLKWKGPK 240 KINRIYGDWL DDLPLVQNLT NQVES |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 2e-89 | C3H family protein |