PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021675426.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 317aa MW: 35542.1 Da PI: 7.8075

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021675426.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	46.5	5.8e-15	242	267	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tGtC+yGd C+FaHg XP_021675426.1 242 QKTELCNKWQETGTCSYGDHCQFAHG 267 69***********************8 PP
2	zf-CCCH	17.7	6.6e-06	280	305	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt Cr +++ C+yG rC+F H+ XP_021675426.1 280 YKTQVCRMVLAGEVCPYGHRCHFRHS 305 99*******66********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence
MEKSVSPLPD PKTVSPPPSK SPPLASPPPS DHLHTQHFAS SFTTLYHSIF PPKPSPLPSS 60 LAFSLTPSTA SPSSAATTDD FDTEHRLHQA RLILEYQELC DHYELSLSRL QAFTEEIELL 120 RQENADLRLT NNELVRLLSL SSQAAIQSRF SSCEMVEPNR FERNTERVLL PKSISVRSSG 180 YLKMNRDGAS NGGQSSTSTR PRVPNHLDKI VSGSVQHRVC VPGGVKREDA ALELDVYNQG 240 MQKTELCNKW QETGTCSYGD HCQFAHGITE LRPVIRHPRY KTQVCRMVLA GEVCPYGHRC 300 HFRHSLTEQE RMIMGPR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	2e-77	C3H family protein