PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021673048.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | C3H | ||||||||
Protein Properties | Length: 503aa MW: 55873.9 Da PI: 9.0995 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.4 | 1.8e-11 | 21 | 47 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p XP_021673048.1 21 PGEPDCSYYIRTGLCRFGATCRFNHPP 47 5789*********************97 PP | |||||||
2 | zf-CCCH | 39.9 | 7.1e-13 | 81 | 106 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ XP_021673048.1 81 GQPECQYYLKTGTCKFGATCKFHHPK 106 5799********************96 PP | |||||||
3 | zf-CCCH | 36.5 | 7.9e-12 | 130 | 152 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C +++rtG+Ck+G++CkF+H++ XP_021673048.1 130 DCAYYLRTGQCKFGSTCKFHHPQ 152 7********************97 PP | |||||||
4 | zf-CCCH | 37.7 | 3.5e-12 | 286 | 312 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_021673048.1 286 PGQPECQFYMKTGDCKFGAVCRFHHPR 312 5789*********************96 PP | |||||||
5 | zf-CCCH | 38.8 | 1.6e-12 | 332 | 358 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G Ck+G++CkF H++ XP_021673048.1 332 PGEPLCIFYSRYGVCKFGPSCKFDHPM 358 589**********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 503 aa Download sequence |
MWQMNLRSNE TMESGPYPER PGEPDCSYYI RTGLCRFGAT CRFNHPPNRK LVLTAACLDK 60 FLELQALAAA RMKGEFPERM GQPECQYYLK TGTCKFGATC KFHHPKDKAG IAGRVSLNIL 120 GYPLRPNEID CAYYLRTGQC KFGSTCKFHH PQPTNVMVPL RGSPIYPTVH SPTSPGQQSY 180 AGGLTNWSRA SFVTSPRWQV PSSYTPLILP QGVVSVPRWN AYCGQLGSVS SPEGRQQTGN 240 SQIYETSRQS ELVNTVSQGA LSPFRSSSVP VGFYALQREN VFPERPGQPE CQFYMKTGDC 300 KFGAVCRFHH PRERLIPAPD CVLSPIGLPL RPGEPLCIFY SRYGVCKFGP SCKFDHPMGI 360 FTYNLSASSS ADPPVRRFLG PSSGSAAFTL SPEGLVEAGS TKPRRLSLSE PRQMPSGSFL 420 PKFVGEFDFN REAFGGSRMK WNVIAYCLLG WIIQGLHISQ AMNNNIHGLP PTSTPGFCNK 480 SLKYIRYQEN IIHDFIGHSL ISI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 0.0 | C3H family protein |