PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021673048.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
Family C3H
Protein Properties Length: 503aa    MW: 55873.9 Da    PI: 9.0995
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021673048.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.41.8e-112147127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C+++ rtG C++G++C+F+H+p
  XP_021673048.1 21 PGEPDCSYYIRTGLCRFGATCRFNHPP 47
                    5789*********************97 PP

2zf-CCCH39.97.1e-1381106227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++++tGtCk+G++CkF+H++
  XP_021673048.1  81 GQPECQYYLKTGTCKFGATCKFHHPK 106
                     5799********************96 PP

3zf-CCCH36.57.9e-12130152527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                      C +++rtG+Ck+G++CkF+H++
  XP_021673048.1 130 DCAYYLRTGQCKFGSTCKFHHPQ 152
                     7********************97 PP

4zf-CCCH37.73.5e-12286312127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+f+++tG Ck+G+ C+F+H++
  XP_021673048.1 286 PGQPECQFYMKTGDCKFGAVCRFHHPR 312
                     5789*********************96 PP

5zf-CCCH38.81.6e-12332358127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++lC f++r+G Ck+G++CkF H++
  XP_021673048.1 332 PGEPLCIFYSRYGVCKFGPSCKFDHPM 358
                     589**********************95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    
MWQMNLRSNE TMESGPYPER PGEPDCSYYI RTGLCRFGAT CRFNHPPNRK LVLTAACLDK  60
FLELQALAAA RMKGEFPERM GQPECQYYLK TGTCKFGATC KFHHPKDKAG IAGRVSLNIL  120
GYPLRPNEID CAYYLRTGQC KFGSTCKFHH PQPTNVMVPL RGSPIYPTVH SPTSPGQQSY  180
AGGLTNWSRA SFVTSPRWQV PSSYTPLILP QGVVSVPRWN AYCGQLGSVS SPEGRQQTGN  240
SQIYETSRQS ELVNTVSQGA LSPFRSSSVP VGFYALQREN VFPERPGQPE CQFYMKTGDC  300
KFGAVCRFHH PRERLIPAPD CVLSPIGLPL RPGEPLCIFY SRYGVCKFGP SCKFDHPMGI  360
FTYNLSASSS ADPPVRRFLG PSSGSAAFTL SPEGLVEAGS TKPRRLSLSE PRQMPSGSFL  420
PKFVGEFDFN REAFGGSRMK WNVIAYCLLG WIIQGLHISQ AMNNNIHGLP PTSTPGFCNK  480
SLKYIRYQEN IIHDFIGHSL ISI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0C3H family protein