PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021673044.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 526aa MW: 58195.5 Da PI: 8.9447

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021673044.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.3	2e-11	44	70	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p XP_021673044.1 44 PGEPDCSYYIRTGLCRFGATCRFNHPP 70 5789*********************97 PP
2	zf-CCCH	39.8	7.5e-13	104	129	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ XP_021673044.1 104 GQPECQYYLKTGTCKFGATCKFHHPK 129 5799********************96 PP
3	zf-CCCH	36.5	8.4e-12	153	175	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C +++rtG+Ck+G++CkF+H++ XP_021673044.1 153 DCAYYLRTGQCKFGSTCKFHHPQ 175 7********************97 PP
4	zf-CCCH	37.6	3.7e-12	309	335	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_021673044.1 309 PGQPECQFYMKTGDCKFGAVCRFHHPR 335 5789*********************96 PP
5	zf-CCCH	38.7	1.7e-12	355	381	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G Ck+G++CkF H++ XP_021673044.1 355 PGEPLCIFYSRYGVCKFGPSCKFDHPM 381 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence
MSRTGPPPVT EGPSLSPSLN EDAMWQMNLR SNETMESGPY PERPGEPDCS YYIRTGLCRF 60 GATCRFNHPP NRKLVLTAAC LDKFLELQAL AAARMKGEFP ERMGQPECQY YLKTGTCKFG 120 ATCKFHHPKD KAGIAGRVSL NILGYPLRPN EIDCAYYLRT GQCKFGSTCK FHHPQPTNVM 180 VPLRGSPIYP TVHSPTSPGQ QSYAGGLTNW SRASFVTSPR WQVPSSYTPL ILPQGVVSVP 240 RWNAYCGQLG SVSSPEGRQQ TGNSQIYETS RQSELVNTVS QGALSPFRSS SVPVGFYALQ 300 RENVFPERPG QPECQFYMKT GDCKFGAVCR FHHPRERLIP APDCVLSPIG LPLRPGEPLC 360 IFYSRYGVCK FGPSCKFDHP MGIFTYNLSA SSSADPPVRR FLGPSSGSAA FTLSPEGLVE 420 AGSTKPRRLS LSEPRQMPSG SFLPKFVGEF DFNREAFGGS RMKWNVIAYC LLGWIIQGLH 480 ISQAMNNNIH GLPPTSTPGF CNKSLKYIRY QENIIHDFIG HSLISI

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence

MSRTGPPPVT EGPSLSPSLN EDAMWQMNLR SNETMESGPY PERPGEPDCS YYIRTGLCRF  60
GATCRFNHPP NRKLVLTAAC LDKFLELQAL AAARMKGEFP ERMGQPECQY YLKTGTCKFG  120
ATCKFHHPKD KAGIAGRVSL NILGYPLRPN EIDCAYYLRT GQCKFGSTCK FHHPQPTNVM  180
VPLRGSPIYP TVHSPTSPGQ QSYAGGLTNW SRASFVTSPR WQVPSSYTPL ILPQGVVSVP  240
RWNAYCGQLG SVSSPEGRQQ TGNSQIYETS RQSELVNTVS QGALSPFRSS SVPVGFYALQ  300
RENVFPERPG QPECQFYMKT GDCKFGAVCR FHHPRERLIP APDCVLSPIG LPLRPGEPLC  360
IFYSRYGVCK FGPSCKFDHP MGIFTYNLSA SSSADPPVRR FLGPSSGSAA FTLSPEGLVE  420
AGSTKPRRLS LSEPRQMPSG SFLPKFVGEF DFNREAFGGS RMKWNVIAYC LLGWIIQGLH  480
ISQAMNNNIH GLPPTSTPGF CNKSLKYIRY QENIIHDFIG HSLISI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	0.0	C3H family protein