PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021673044.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | C3H | ||||||||
Protein Properties | Length: 526aa MW: 58195.5 Da PI: 8.9447 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.3 | 2e-11 | 44 | 70 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p XP_021673044.1 44 PGEPDCSYYIRTGLCRFGATCRFNHPP 70 5789*********************97 PP | |||||||
2 | zf-CCCH | 39.8 | 7.5e-13 | 104 | 129 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ XP_021673044.1 104 GQPECQYYLKTGTCKFGATCKFHHPK 129 5799********************96 PP | |||||||
3 | zf-CCCH | 36.5 | 8.4e-12 | 153 | 175 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C +++rtG+Ck+G++CkF+H++ XP_021673044.1 153 DCAYYLRTGQCKFGSTCKFHHPQ 175 7********************97 PP | |||||||
4 | zf-CCCH | 37.6 | 3.7e-12 | 309 | 335 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_021673044.1 309 PGQPECQFYMKTGDCKFGAVCRFHHPR 335 5789*********************96 PP | |||||||
5 | zf-CCCH | 38.7 | 1.7e-12 | 355 | 381 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G Ck+G++CkF H++ XP_021673044.1 355 PGEPLCIFYSRYGVCKFGPSCKFDHPM 381 589**********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 526 aa Download sequence |
MSRTGPPPVT EGPSLSPSLN EDAMWQMNLR SNETMESGPY PERPGEPDCS YYIRTGLCRF 60 GATCRFNHPP NRKLVLTAAC LDKFLELQAL AAARMKGEFP ERMGQPECQY YLKTGTCKFG 120 ATCKFHHPKD KAGIAGRVSL NILGYPLRPN EIDCAYYLRT GQCKFGSTCK FHHPQPTNVM 180 VPLRGSPIYP TVHSPTSPGQ QSYAGGLTNW SRASFVTSPR WQVPSSYTPL ILPQGVVSVP 240 RWNAYCGQLG SVSSPEGRQQ TGNSQIYETS RQSELVNTVS QGALSPFRSS SVPVGFYALQ 300 RENVFPERPG QPECQFYMKT GDCKFGAVCR FHHPRERLIP APDCVLSPIG LPLRPGEPLC 360 IFYSRYGVCK FGPSCKFDHP MGIFTYNLSA SSSADPPVRR FLGPSSGSAA FTLSPEGLVE 420 AGSTKPRRLS LSEPRQMPSG SFLPKFVGEF DFNREAFGGS RMKWNVIAYC LLGWIIQGLH 480 ISQAMNNNIH GLPPTSTPGF CNKSLKYIRY QENIIHDFIG HSLISI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 0.0 | C3H family protein |