PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021671475.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 597aa MW: 66042.1 Da PI: 4.8901

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021671475.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22	2.8e-07	18	40	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G C GdrC F Hgp XP_021671475.1 18 VPCIFFQK-GLCLKGDRCAFLHGP 40 69****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 597 aa Download sequence
MAVAPAMNTP QNSAKQAVPC IFFQKGLCLK GDRCAFLHGP GNKVSQSMVP SSTELSSQNK 60 ASGGPQKLTQ GHKIAQANFS KVVGASAEAK PAPKPEIGPP RNGAGVDGNL APSKIMDAEF 120 SKYKATNLPP VVNGNSSRFN HLHQSQIQDD HVFQNGKDAD EFLRESSPGF DVLVDNELRN 180 SDYYHGEDQY GRTRGHEGRS LNPVDEYDMG HSADYSSVAD IDRETYCDMQ GQYAWEQHRA 240 STERVLDGPA HLEQRAYSKA DSPKLIDESD LRYRLSKQRS HGLRSVVSND FGPENHVSSI 300 LHGRRKLPER SPYGSDLHVE KEIGRSRNWG RLSPGRSEIP SHQGRLRDRI KARVEEDYNS 360 EGRNLRGIRM RREMTDERST DFAGPKSLAE LKGTKSIEGR MQQSLGKRKQ LEDHRPSEGN 420 LSFEGPMPLS EILKRKREAE ATATGSGVSF VSKNANNQKE SEESLLGNSD NAGVADRQGI 480 LSSIKDEASK QVLKDEESNS AAAGVVRTVG ESTEVAVGQY ASQQPNPSEP ETEDVMIVDD 540 GLEDHEYEAD DQREGDYEYE QVDEGEYYEE GENADAEEQY ADDEDGDDFA KKIGVIY

Sequence ? help Back to Top

Protein Sequence Length: 597 aa Download sequence

MAVAPAMNTP QNSAKQAVPC IFFQKGLCLK GDRCAFLHGP GNKVSQSMVP SSTELSSQNK  60
ASGGPQKLTQ GHKIAQANFS KVVGASAEAK PAPKPEIGPP RNGAGVDGNL APSKIMDAEF  120
SKYKATNLPP VVNGNSSRFN HLHQSQIQDD HVFQNGKDAD EFLRESSPGF DVLVDNELRN  180
SDYYHGEDQY GRTRGHEGRS LNPVDEYDMG HSADYSSVAD IDRETYCDMQ GQYAWEQHRA  240
STERVLDGPA HLEQRAYSKA DSPKLIDESD LRYRLSKQRS HGLRSVVSND FGPENHVSSI  300
LHGRRKLPER SPYGSDLHVE KEIGRSRNWG RLSPGRSEIP SHQGRLRDRI KARVEEDYNS  360
EGRNLRGIRM RREMTDERST DFAGPKSLAE LKGTKSIEGR MQQSLGKRKQ LEDHRPSEGN  420
LSFEGPMPLS EILKRKREAE ATATGSGVSF VSKNANNQKE SEESLLGNSD NAGVADRQGI  480
LSSIKDEASK QVLKDEESNS AAAGVVRTVG ESTEVAVGQY ASQQPNPSEP ETEDVMIVDD  540
GLEDHEYEAD DQREGDYEYE QVDEGEYYEE GENADAEEQY ADDEDGDDFA KKIGVIY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	363	372	RNLRGIRMRR