PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021671474.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 696aa MW: 76893.2 Da PI: 5.0518

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021671474.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.8	3.3e-07	117	139	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G C GdrC F Hgp XP_021671474.1 117 VPCIFFQK-GLCLKGDRCAFLHGP 139 69****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 696 aa Download sequence
MIAATQQQQA TATVPSAEEE ALKRNTDCVY FLASPLTCKK GSECEYRHSE YARVNPRDCY 60 FWLNGNCLNP KCGFRHPPLD GLFGTQASAS TGSSLPPSHM AVAPAMNTPQ NSAKQAVPCI 120 FFQKGLCLKG DRCAFLHGPG NKVSQSMVPS STELSSQNKA SGGPQKLTQG HKIAQANFSK 180 VVGASAEAKP APKPEIGPPR NGAGVDGNLA PSKIMDAEFS KYKATNLPPV VNGNSSRFNH 240 LHQSQIQDDH VFQNGKDADE FLRESSPGFD VLVDNELRNS DYYHGEDQYG RTRGHEGRSL 300 NPVDEYDMGH SADYSSVADI DRETYCDMQG QYAWEQHRAS TERVLDGPAH LEQRAYSKAD 360 SPKLIDESDL RYRLSKQRSH GLRSVVSNDF GPENHVSSIL HGRRKLPERS PYGSDLHVEK 420 EIGRSRNWGR LSPGRSEIPS HQGRLRDRIK ARVEEDYNSE GRNLRGIRMR REMTDERSTD 480 FAGPKSLAEL KGTKSIEGRM QQSLGKRKQL EDHRPSEGNL SFEGPMPLSE ILKRKREAEA 540 TATGSGVSFV SKNANNQKES EESLLGNSDN AGVADRQGIL SSIKDEASKQ VLKDEESNSA 600 AAGVVRTVGE STEVAVGQYA SQQPNPSEPE TEDVMIVDDG LEDHEYEADD QREGDYEYEQ 660 VDEGEYYEEG ENADAEEQYA DDEDGDDFAK KIGVIY

Sequence ? help Back to Top

Protein Sequence Length: 696 aa Download sequence

MIAATQQQQA TATVPSAEEE ALKRNTDCVY FLASPLTCKK GSECEYRHSE YARVNPRDCY  60
FWLNGNCLNP KCGFRHPPLD GLFGTQASAS TGSSLPPSHM AVAPAMNTPQ NSAKQAVPCI  120
FFQKGLCLKG DRCAFLHGPG NKVSQSMVPS STELSSQNKA SGGPQKLTQG HKIAQANFSK  180
VVGASAEAKP APKPEIGPPR NGAGVDGNLA PSKIMDAEFS KYKATNLPPV VNGNSSRFNH  240
LHQSQIQDDH VFQNGKDADE FLRESSPGFD VLVDNELRNS DYYHGEDQYG RTRGHEGRSL  300
NPVDEYDMGH SADYSSVADI DRETYCDMQG QYAWEQHRAS TERVLDGPAH LEQRAYSKAD  360
SPKLIDESDL RYRLSKQRSH GLRSVVSNDF GPENHVSSIL HGRRKLPERS PYGSDLHVEK  420
EIGRSRNWGR LSPGRSEIPS HQGRLRDRIK ARVEEDYNSE GRNLRGIRMR REMTDERSTD  480
FAGPKSLAEL KGTKSIEGRM QQSLGKRKQL EDHRPSEGNL SFEGPMPLSE ILKRKREAEA  540
TATGSGVSFV SKNANNQKES EESLLGNSDN AGVADRQGIL SSIKDEASKQ VLKDEESNSA  600
AAGVVRTVGE STEVAVGQYA SQQPNPSEPE TEDVMIVDDG LEDHEYEADD QREGDYEYEQ  660
VDEGEYYEEG ENADAEEQYA DDEDGDDFAK KIGVIY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	462	471	RNLRGIRMRR