PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021671473.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 696aa MW: 77279.5 Da PI: 5.0708

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021671473.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.8	3.3e-07	82	104	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G C GdrC F Hgp XP_021671473.1 82 VPCIFFQK-GLCLKGDRCAFLHGP 104 69****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 696 aa Download sequence
MIAATQQQQQ QATATAPSAE EEALKRNTDC VYFLASPLTC KKPLDGLFGT QASASAGSSL 60 PPSHMAVATA MNTPQNSAKQ AVPCIFFQKG LCLKGDRCAF LHGPNPTSNK VSQSMVHSST 120 ELLPQKKASG GPQKLSQDHK TPQANSSKGA GAPAEAKPAS KPEIVPPRNG AGVERNLPPS 180 KSMDAELSKY KATNLLPVVN GSSSHFNRVH QSQVQDDHVF QNGKDADEFL RESSPGFDVL 240 VDDELRNSDY YHGEDQYGRT RGREGRSLNP VDEYDMVHSA DYSSVADIDR ETYRDLRDYD 300 TYELMQGQHA WEQRRDSSER VLDGPAHLER RAYLKADSPE LIDESDLRYR LSKQRRVHGL 360 RSVVSHDFFP ENHVEERGHW SSSQRDSHNF PSRESSMSSL LHGRIKLPER STNGSDLHVE 420 MEIGRGRNWG RLSSGMSEIP SHQGRLRDRI KARVEEDYNT EGRNLRGMRM RREMTDERRT 480 DFAGPKSLAE LKGTKNIEGR MQQSLGKRKQ LEDHRPSGNL SFEGPMPLSE ILKRKREAEA 540 AATGSGVSFV SKNENNQKES KESLLGNSYS AGVAETRGDL SSTKDEASKQ VLKDEKSNSA 600 AAGVVGTVGE STEVAADQHA SQQPNPSEPE TEDVMTVEDG VEDHEYEADD QREGDYEYEQ 660 VDEGEYYEEG ENADAEEQYA DDEDGDDFAK KIGVMY

Sequence ? help Back to Top

Protein Sequence Length: 696 aa Download sequence

MIAATQQQQQ QATATAPSAE EEALKRNTDC VYFLASPLTC KKPLDGLFGT QASASAGSSL  60
PPSHMAVATA MNTPQNSAKQ AVPCIFFQKG LCLKGDRCAF LHGPNPTSNK VSQSMVHSST  120
ELLPQKKASG GPQKLSQDHK TPQANSSKGA GAPAEAKPAS KPEIVPPRNG AGVERNLPPS  180
KSMDAELSKY KATNLLPVVN GSSSHFNRVH QSQVQDDHVF QNGKDADEFL RESSPGFDVL  240
VDDELRNSDY YHGEDQYGRT RGREGRSLNP VDEYDMVHSA DYSSVADIDR ETYRDLRDYD  300
TYELMQGQHA WEQRRDSSER VLDGPAHLER RAYLKADSPE LIDESDLRYR LSKQRRVHGL  360
RSVVSHDFFP ENHVEERGHW SSSQRDSHNF PSRESSMSSL LHGRIKLPER STNGSDLHVE  420
MEIGRGRNWG RLSSGMSEIP SHQGRLRDRI KARVEEDYNT EGRNLRGMRM RREMTDERRT  480
DFAGPKSLAE LKGTKNIEGR MQQSLGKRKQ LEDHRPSGNL SFEGPMPLSE ILKRKREAEA  540
AATGSGVSFV SKNENNQKES KESLLGNSYS AGVAETRGDL SSTKDEASKQ VLKDEKSNSA  600
AAGVVGTVGE STEVAADQHA SQQPNPSEPE TEDVMTVEDG VEDHEYEADD QREGDYEYEQ  660
VDEGEYYEEG ENADAEEQYA DDEDGDDFAK KIGVMY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	463	472	RNLRGMRMRR