PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021671472.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 733aa MW: 81681.4 Da PI: 5.2296

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021671472.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.7	3.5e-07	119	141	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G C GdrC F Hgp XP_021671472.1 119 VPCIFFQK-GLCLKGDRCAFLHGP 141 69****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence
MIAATQQQQQ QATATAPSAE EEALKRNTDC VYFLASPLTC KKGSECEYRH SEYARVNPRD 60 CYFWLNGNCL NPKCGFRHPP LDGLFGTQAS ASAGSSLPPS HMAVATAMNT PQNSAKQAVP 120 CIFFQKGLCL KGDRCAFLHG PNPTSNKVSQ SMVHSSTELL PQKKASGGPQ KLSQDHKTPQ 180 ANSSKGAGAP AEAKPASKPE IVPPRNGAGV ERNLPPSKSM DAELSKYKAT NLLPVVNGSS 240 SHFNRVHQSQ VQDDHVFQNG KDADEFLRES SPGFDVLVDD ELRNSDYYHG EDQYGRTRGR 300 EGRSLNPVDE YDMVHSADYS SVADIDRETY RDLRDYDTYE LMQGQHAWEQ RRDSSERVLD 360 GPAHLERRAY LKADSPELID ESDLRYRLSK QRRVHGLRSV VSHDFFPENH VEERGHWSSS 420 QRDSHNFPSR ESSMSSLLHG RIKLPERSTN GSDLHVEMEI GRGRNWGRLS SGMSEIPSHQ 480 GRLRDRIKAR VEEDYNTEGR NLRGMRMRRE MTDERRTDFA GPKSLAELKG TKNIEGRMQQ 540 SLGKRKQLED HRPSGNLSFE GPMPLSEILK RKREAEAAAT GSGVSFVSKN ENNQKESKES 600 LLGNSYSAGV AETRGDLSST KDEASKQVLK DEKSNSAAAG VVGTVGESTE VAADQHASQQ 660 PNPSEPETED VMTVEDGVED HEYEADDQRE GDYEYEQVDE GEYYEEGENA DAEEQYADDE 720 DGDDFAKKIG VMY

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence

MIAATQQQQQ QATATAPSAE EEALKRNTDC VYFLASPLTC KKGSECEYRH SEYARVNPRD  60
CYFWLNGNCL NPKCGFRHPP LDGLFGTQAS ASAGSSLPPS HMAVATAMNT PQNSAKQAVP  120
CIFFQKGLCL KGDRCAFLHG PNPTSNKVSQ SMVHSSTELL PQKKASGGPQ KLSQDHKTPQ  180
ANSSKGAGAP AEAKPASKPE IVPPRNGAGV ERNLPPSKSM DAELSKYKAT NLLPVVNGSS  240
SHFNRVHQSQ VQDDHVFQNG KDADEFLRES SPGFDVLVDD ELRNSDYYHG EDQYGRTRGR  300
EGRSLNPVDE YDMVHSADYS SVADIDRETY RDLRDYDTYE LMQGQHAWEQ RRDSSERVLD  360
GPAHLERRAY LKADSPELID ESDLRYRLSK QRRVHGLRSV VSHDFFPENH VEERGHWSSS  420
QRDSHNFPSR ESSMSSLLHG RIKLPERSTN GSDLHVEMEI GRGRNWGRLS SGMSEIPSHQ  480
GRLRDRIKAR VEEDYNTEGR NLRGMRMRRE MTDERRTDFA GPKSLAELKG TKNIEGRMQQ  540
SLGKRKQLED HRPSGNLSFE GPMPLSEILK RKREAEAAAT GSGVSFVSKN ENNQKESKES  600
LLGNSYSAGV AETRGDLSST KDEASKQVLK DEKSNSAAAG VVGTVGESTE VAADQHASQQ  660
PNPSEPETED VMTVEDGVED HEYEADDQRE GDYEYEQVDE GEYYEEGENA DAEEQYADDE  720
DGDDFAKKIG VMY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	500	509	RNLRGMRMRR