PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021671198.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | NF-YC | ||||||||
Protein Properties | Length: 250aa MW: 27894.3 Da PI: 6.1505 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 173.7 | 1.9e-54 | 77 | 180 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw +q ++k+ dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdfl XP_021671198.1 77 QLQTFWVNQyqkVDKVVDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFL 171 89******98888999******************************************************************************* PP NF-YC 93 vdivprdel 101 vdivpr++l XP_021671198.1 172 VDIVPREDL 180 ******987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence |
MDQQGYGQPP PAGVVGSTGQ MPYGTNPYQP NQTSSAQNPG SIGTIQSAGQ PAGAQLAQNQ 60 LAYQQIHHQQ QQQLQQQLQT FWVNQYQKVD KVVDFKNHSL PLARIKKIMK ADEDVRMISA 120 EAPVVFARAC EMFILELTLR SWNHTEENKR RTLQKNDIAA AITRTDIFDF LVDIVPREDL 180 KDEVLASISR EAMPVGGPAD ALPYGYMPPQ HVAQVGTPGM IYAQQSHAYM AQQIWPQQGS 240 EERQQSPSDH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 150 | 156 | RRTLQKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54830.3 | 2e-80 | NF-YC family protein |