PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021670068.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 675aa MW: 73506.2 Da PI: 6.813

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021670068.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.6	3.4e-06	266	286	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC+ d+C +aHg XP_021670068.1 266 PCPEFRK-GTCQKADSCEYAHG 286 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 675 aa Download sequence
MCSGSKGKLF PANPTMEVES GSPKYGILSK GSVLLELSAS DDLVGFKSEI EEKGLDVDEA 60 SYWYGRRIGL KKMGFEERTP LMIAAMFGST NVLKYIIGTG KVDVNRACGW DKVTALHCAV 120 AGCSNSLVEI VKLLLDASAD TNCIDANGNR PSDLFTPSLK SPCNSRRKLV ELLLKGESLS 180 EDEEEKLIMM SLPAKEGTEK KEYPIDVSLP DINNGVYGTD EFRMYCFKVK PCSRAYSHDW 240 TECPFVHPGE NARRRDPKKY PYSCVPCPEF RKGTCQKADS CEYAHGVFES WLHPAQYRTR 300 LCKDETGCSR KVCFFAHKPE ELRPVYASTG SAMPSPKSVS VSSMDTATLT PLSLGSPSLT 360 LPTVSTPPMS PLTVASSSPK SGGLWQNKVN LNPPALQLPG SRLKTALCAR DLDLEMELLG 420 LENHISQLQQ QQLMDEISGL SSPSCWSKDF NRIGDLKPTN LDDVFGSFDP SLLSPLQGMS 480 LKSSTPTQLQ SPTGLQIRQN MNQSRSSYPA NLSSTSVRKP ASYGFDSSAA VAAAVMNSRS 540 SAFAKRSHSF IDRGAAGTNR LGITAAANSV SMVSSNLSDW SSPDGKLDWG VQGDELNKLK 600 KSASFGFRNN NHTTAADLTL SNVNEPDVSW VNSLVKDVPT AGLGAEKQYN LSKGVHESLP 660 PWMEQLYIEQ EQIVA

Sequence ? help Back to Top

Protein Sequence Length: 675 aa Download sequence

MCSGSKGKLF PANPTMEVES GSPKYGILSK GSVLLELSAS DDLVGFKSEI EEKGLDVDEA  60
SYWYGRRIGL KKMGFEERTP LMIAAMFGST NVLKYIIGTG KVDVNRACGW DKVTALHCAV  120
AGCSNSLVEI VKLLLDASAD TNCIDANGNR PSDLFTPSLK SPCNSRRKLV ELLLKGESLS  180
EDEEEKLIMM SLPAKEGTEK KEYPIDVSLP DINNGVYGTD EFRMYCFKVK PCSRAYSHDW  240
TECPFVHPGE NARRRDPKKY PYSCVPCPEF RKGTCQKADS CEYAHGVFES WLHPAQYRTR  300
LCKDETGCSR KVCFFAHKPE ELRPVYASTG SAMPSPKSVS VSSMDTATLT PLSLGSPSLT  360
LPTVSTPPMS PLTVASSSPK SGGLWQNKVN LNPPALQLPG SRLKTALCAR DLDLEMELLG  420
LENHISQLQQ QQLMDEISGL SSPSCWSKDF NRIGDLKPTN LDDVFGSFDP SLLSPLQGMS  480
LKSSTPTQLQ SPTGLQIRQN MNQSRSSYPA NLSSTSVRKP ASYGFDSSAA VAAAVMNSRS  540
SAFAKRSHSF IDRGAAGTNR LGITAAANSV SMVSSNLSDW SSPDGKLDWG VQGDELNKLK  600
KSASFGFRNN NHTTAADLTL SNVNEPDVSW VNSLVKDVPT AGLGAEKQYN LSKGVHESLP  660
PWMEQLYIEQ EQIVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	0.0	C3H family protein