PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021667803.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 341aa MW: 38026.8 Da PI: 8.1988

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021667803.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.6	5e-09	86	111	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+ C f+ G Ck G++C+FaHg+ XP_021667803.1 86 FKTRMCAKFRT-GNCKNGENCNFAHGM 111 699****99.***********95 PP
2	zf-CCCH	29.7	1.1e-09	149	172	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k++lC+ f+ + +C+yGdrC+F H XP_021667803.1 149 KMKLCKKFYNGEECPYGDRCNFLH 172 789*****66********** PP
3	zf-CCCH	42.1	1.5e-13	233	259	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC + tG+C++G++C+FaHg+ XP_021667803.1 233 WKTKLCTKWETTGQCPFGEKCHFAHGQ 259 8************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence
MSYPDSRPPF MSAQFPYQSG SDAIGVWPQF PVNSNEQFDS LSQFEQLQPP YKRPRNPEDS 60 SSQSVNSKMP LPNNLPINKG TTNIFFKTRM CAKFRTGNCK NGENCNFAHG MQDLRQPPPN 120 WQELVGGGVR AEEDRSAGNW DDDQRIIHKM KLCKKFYNGE ECPYGDRCNF LHEDPSKFRD 180 DIGRFRESSA ISIGTTGQPM VPGIGGSNAT EVNKPVINSC SDAFRANMKP VYWKTKLCTK 240 WETTGQCPFG EKCHFAHGQA ELKVPGGRAE GENAGSILTK PPVLANNASP STTASVPNVI 300 EEAQSKKCLL KWKGPKKINR IYGDWLDDLP LVQNLTNQVE S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	2e-92	C3H family protein