PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021667802.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | C3H | ||||||||
Protein Properties | Length: 341aa MW: 38026.8 Da PI: 8.1988 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.6 | 5e-09 | 86 | 111 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+ C f+ G Ck G++C+FaHg+ XP_021667802.1 86 FKTRMCAKFRT-GNCKNGENCNFAHGM 111 699******99.*************95 PP | |||||||
2 | zf-CCCH | 29.7 | 1.1e-09 | 149 | 172 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k++lC+ f+ + +C+yGdrC+F H XP_021667802.1 149 KMKLCKKFYNGEECPYGDRCNFLH 172 789*******66************ PP | |||||||
3 | zf-CCCH | 42.1 | 1.5e-13 | 233 | 259 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC + tG+C++G++C+FaHg+ XP_021667802.1 233 WKTKLCTKWETTGQCPFGEKCHFAHGQ 259 8************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence |
MSYPDSRPPF MSAQFPYQSG SDAIGVWPQF PVNSNEQFDS LSQFEQLQPP YKRPRNPEDS 60 SSQSVNSKMP LPNNLPINKG TTNIFFKTRM CAKFRTGNCK NGENCNFAHG MQDLRQPPPN 120 WQELVGGGVR AEEDRSAGNW DDDQRIIHKM KLCKKFYNGE ECPYGDRCNF LHEDPSKFRD 180 DIGRFRESSA ISIGTTGQPM VPGIGGSNAT EVNKPVINSC SDAFRANMKP VYWKTKLCTK 240 WETTGQCPFG EKCHFAHGQA ELKVPGGRAE GENAGSILTK PPVLANNASP STTASVPNVI 300 EEAQSKKCLL KWKGPKKINR IYGDWLDDLP LVQNLTNQVE S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 2e-92 | C3H family protein |