PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021664635.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
Family C3H
Protein Properties Length: 922aa    MW: 100616 Da    PI: 8.2178
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021664635.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.11e-05561581525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                     +C ++  tG C++G+ C F+H
  XP_021664635.1 561 PCTNYVSTGSCSRGEDCMFSH 581
                     7******************** PP

Sequence ? help Back to Top
Protein Sequence    Length: 922 aa     Download sequence    
MEKPQSETPK SLFHFRPHHK SHLKSETYYT LVRILSQCHN HPELCELSRI VPQELKSDNH  60
SNEPGKASEV VTGMDQIDSL TQNIVLGNEN FDPAGFRDGL CDTKAVIDEI ENFMRIEEDE  120
DPSKQRDLPV AVNDDTNETG LQDKGFGQLQ RLLMDELEDV MKGNKEVVHD NVCNFATTSL  180
DESQNGSAVG TFSNNQEAHL DLQPIFMEGC GGVGRLHIDK EHSTQNTFAT IDSSLDKIVT  240
YEVSKLSDNH EDKSSSMRNN QLEASHEMRQ KEMESGKSVC TIGAVGSSDH MIEDGEMEEG  300
EISGEFQVCG RLVDTPSEDV VGPQEQKQLS EDVTDRNKFP LNDKKEANKK DSGSSFITLE  360
MVDNMIDTRK VETKDVGDKM ASKRKVIAYG DPILVEELGG YKKQKKICET KELKKGSGVK  420
GKKKGKNSAP YAKSGDQIAI VSQENACKEK LKQDAGLRNK KKRGPPSEER KAKKKEKKRK  480
KRAQKNRELG VKRLKLRPVQ NPKPLVFCRH YIKGRCQEGE NCKFSHDTIP LTKSKPCCHF  540
ARHSCLKGDD CPFDHQLSKY PCTNYVSTGS CSRGEDCMFS HKLPLKEDLP SASNVSTPDL  600
KPQSLPGTSN SKKQLDSDGT SHHNAKASPD TVGVSSCKNT EHNVAKSVVN PPVLVPKGIT  660
FLSAGKSSVA ESSHSVPGSS SLTRNEEFKV GNKTDRSASG SIQNSNEIPR GTPAAVPPKG  720
INFLSFGKAP WEFSSVKKLT SNNGAKLSLS NNVDLTKQSS SPLHTSNSIQ VGKESRQSVS  780
NTPPWLNKML QVSKFAAVPL KSNILSSGES STDGSRSNSL GSSSSNSASY VDRSVQASAV  840
APEKPSAIPP GLSASAHGSG PSADHLEHPW LKNTPKSAQK AFLSTLAFAA KVESEMKIKQ  900
SSIGTLAVSS RAIKETGDSV QP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1460480KKKRGPPSEERKAKKKEKKRK
2460482KKKRGPPSEERKAKKKEKKRKKR
3460485KKKRGPPSEERKAKKKEKKRKKRAQK
4461483KKKRGPPSEERKAKKKEKKRKKR
5470478RKAKKKEKK
6474482RKAKKKEKK
7477481KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.24e-06C3H family protein