PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021664635.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | C3H | ||||||||
Protein Properties | Length: 922aa MW: 100616 Da PI: 8.2178 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.1 | 1e-05 | 561 | 581 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C ++ tG C++G+ C F+H XP_021664635.1 561 PCTNYVSTGSCSRGEDCMFSH 581 7******************** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 922 aa Download sequence |
MEKPQSETPK SLFHFRPHHK SHLKSETYYT LVRILSQCHN HPELCELSRI VPQELKSDNH 60 SNEPGKASEV VTGMDQIDSL TQNIVLGNEN FDPAGFRDGL CDTKAVIDEI ENFMRIEEDE 120 DPSKQRDLPV AVNDDTNETG LQDKGFGQLQ RLLMDELEDV MKGNKEVVHD NVCNFATTSL 180 DESQNGSAVG TFSNNQEAHL DLQPIFMEGC GGVGRLHIDK EHSTQNTFAT IDSSLDKIVT 240 YEVSKLSDNH EDKSSSMRNN QLEASHEMRQ KEMESGKSVC TIGAVGSSDH MIEDGEMEEG 300 EISGEFQVCG RLVDTPSEDV VGPQEQKQLS EDVTDRNKFP LNDKKEANKK DSGSSFITLE 360 MVDNMIDTRK VETKDVGDKM ASKRKVIAYG DPILVEELGG YKKQKKICET KELKKGSGVK 420 GKKKGKNSAP YAKSGDQIAI VSQENACKEK LKQDAGLRNK KKRGPPSEER KAKKKEKKRK 480 KRAQKNRELG VKRLKLRPVQ NPKPLVFCRH YIKGRCQEGE NCKFSHDTIP LTKSKPCCHF 540 ARHSCLKGDD CPFDHQLSKY PCTNYVSTGS CSRGEDCMFS HKLPLKEDLP SASNVSTPDL 600 KPQSLPGTSN SKKQLDSDGT SHHNAKASPD TVGVSSCKNT EHNVAKSVVN PPVLVPKGIT 660 FLSAGKSSVA ESSHSVPGSS SLTRNEEFKV GNKTDRSASG SIQNSNEIPR GTPAAVPPKG 720 INFLSFGKAP WEFSSVKKLT SNNGAKLSLS NNVDLTKQSS SPLHTSNSIQ VGKESRQSVS 780 NTPPWLNKML QVSKFAAVPL KSNILSSGES STDGSRSNSL GSSSSNSASY VDRSVQASAV 840 APEKPSAIPP GLSASAHGSG PSADHLEHPW LKNTPKSAQK AFLSTLAFAA KVESEMKIKQ 900 SSIGTLAVSS RAIKETGDSV QP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 460 | 480 | KKKRGPPSEERKAKKKEKKRK |
2 | 460 | 482 | KKKRGPPSEERKAKKKEKKRKKR |
3 | 460 | 485 | KKKRGPPSEERKAKKKEKKRKKRAQK |
4 | 461 | 483 | KKKRGPPSEERKAKKKEKKRKKR |
5 | 470 | 478 | RKAKKKEKK |
6 | 474 | 482 | RKAKKKEKK |
7 | 477 | 481 | KKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.2 | 4e-06 | C3H family protein |