PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_021663065.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 408aa MW: 44966.4 Da PI: 7.9207 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.7 | 4.2e-08 | 158 | 178 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G Ck Gd C FaHg XP_021663065.1 158 ACPDFRK-GNCKKGDACEFAHG 178 7******.*************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 408 aa Download sequence |
MPVNLHTKSQ TQSNRISPAK KMMLGERHRP NPTIHVPPWA LVDDANPDVY PSSPLSSHSS 60 NAATASDYNP YYLQEALAAL QRYLPSNEPE LDSDSELSGL EPGSPVDAYS CDHFRMFEFK 120 VRRCARGRSH DWTECPYAHP GEKARRRDPR KYHYSGTACP DFRKGNCKKG DACEFAHGVF 180 ECWLHPARYR TQPCKDGPNC RRRVCFFAHT AEQLRVLPQQ SPRSVNSVDS YDGSPLRQAR 240 DASCAKSLPF LASPGSISPP ATPPVESPPM SPMTQSLSRS LGSNSINEMV ASLRNLQLGK 300 VNSLPPSWNA QIGGSGFGSP RGSMVRPGFC SLPSTPTCGP TRSGLSYCDV WENVCEEEPA 360 MERVESGRGL RAKMFEKLSK DYSLGQVDQD PGQSSNGPDV GWVSELLM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G19810.1 | 1e-145 | C3H family protein |