PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021662176.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 1594aa MW: 175091 Da PI: 6.1915

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021662176.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.3	4.9e-07	1571	1594	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ f+++G+Ck G++C++ H+ XP_021662176.1 1571 GQRVCK-FYENGYCKKGASCSYLHP 1594 6799.6666***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1594 aa Download sequence
MDQQQQQLQL KLEEYRPCTQ QDKEYDNSLR GADPMTIDQC ETIREMDDSQ LVGTSTAVAA 60 LTRDVSMVDV EVRTVATVAV ADMSTIKRKR GRPPRIQGKT GPPSLSQRKK KDEEDVCFIC 120 FDGGSLVLCD RRGCPKAYHP ACIKRDEAFF RSKAKWNCGW HICSRCQKAS HYMCYTCPYS 180 LCKGCTKDAD YVCVRGNKGF CGTCMRTVML IENISLGNTE MVQVDFDDKS SWEYLFKVYW 240 VYLKAKLSLT IDELTKAKNP WKGDELPKTR NSWKGAGIVV PKEASSGETY HGNDQKGSCL 300 DNCCENVEAN HSKRRKTKDQ PNLLNENNSP VVEKLDIDIV APLPEGTTWA TKELLEFVAH 360 MKNGDTSVLS QFDTQGLLLE YIKRNNLRDP RQKCQIVCDS RLVTLFGKPR VGHFEMLKLL 420 EYHFLIKEKS PADDVVRVGV ADAVGGQLEA SGSIDSQLIT NNDKRRRTRK KMDERGPLIH 480 PNPDEYAAID VHNINLLYLK RNLVENLLDD FEKFHEKVVG SFVRIRISGF DQKQDMHRLV 540 QVVGTSKVAE SYKVGSRTTN IMLEILNLDK KEVISIDGIS SQEFSEDECR RLRQSIKCGL 600 IKRLKVGEIQ EKTMALQHVK VSDWLEAEIS RLNHLRDRAS EKGHRKELRE CVEKLELLKS 660 PKERERRLLE IPNIHSDPSM DPSHESEEDA GESDEKNPGD HVRPRLTCVG RNGAELNSSL 720 REVDEDVGNS AEKNLATACK RNKSMCIFNM DSDGTTQVHE RVGESTWSHG GGVFRLNSQN 780 TSRNQLGATS SVASDWNSQA ALRSESLPGL VILPPFSSGR EPSVIDFETE KLWRYQDPSG 840 KFQGPFSMLQ LRKWKTSGLF PPDFRVWRIY EKQDDSILLT DALVGRFPKG PLQHCSSYLL 900 PQETTVASND ACKRWGHGLS QSTDVTWIDN KGVDHDLKPV QNGVSVHGNG DNELVRSNEL 960 GFHSSTGTKA VDVAITNTAL AKSSLQGWEL SKGGKSWAGL SPPPSGKLFE TPLLQAREGH 1020 GDEKWSSNPC HADGNSHTTT MGRTNIDEKC KHADSEGYSS QSSGQNWGSQ AIYSSSSGWE 1080 SNSGFVSGAK SSEKSEQNQK IGFSDLPSPT AKHSDGDLKG QAADNKLSVG SNVPVQDSGP 1140 SWSTASSLVV GGGQHREVAG DWGGYSPTPA KPSVEEWDSN LVNASSLKPT EGVSDHAATP 1200 TSGIGQLTHS SPQYPTIDTS TWQPMVPEPN EFCSLVDESV SDLLAEVEAM ESLGGLPSPT 1260 SKMSCGGELT PGSDDDCFSP VEPFSPAPDP GRSDALSSTG DVQMPSQLTA SDEPLRLSLM 1320 PSQPTVTDEP HTITQMSSQL TVTDKPHQLS RMPPHSVAPD EPLGASPVPS KSTLTEESLG 1380 LWQTNFLDPQ KSFSGHSSSS AEVEGDAKRS DVSVNQCSEI EPLASSTVNQ GEAGSDTRSP 1440 TPSAVSQLEA GSDTRHPESS TADASWGTVK GTANLDRGAP QGNMNMAWGT GHGSAQQQTN 1500 SNPAISTGNV GSWGNQLRNG DNRYSGPRDN LNNYFQGRDS GFGRDRSSWN RQPTYGYGNG 1560 GGGSFKPQGK GQRVCKFYEN GYCKKGASCS YLHP

Sequence ? help Back to Top

Protein Sequence Length: 1594 aa Download sequence

MDQQQQQLQL KLEEYRPCTQ QDKEYDNSLR GADPMTIDQC ETIREMDDSQ LVGTSTAVAA  60
LTRDVSMVDV EVRTVATVAV ADMSTIKRKR GRPPRIQGKT GPPSLSQRKK KDEEDVCFIC  120
FDGGSLVLCD RRGCPKAYHP ACIKRDEAFF RSKAKWNCGW HICSRCQKAS HYMCYTCPYS  180
LCKGCTKDAD YVCVRGNKGF CGTCMRTVML IENISLGNTE MVQVDFDDKS SWEYLFKVYW  240
VYLKAKLSLT IDELTKAKNP WKGDELPKTR NSWKGAGIVV PKEASSGETY HGNDQKGSCL  300
DNCCENVEAN HSKRRKTKDQ PNLLNENNSP VVEKLDIDIV APLPEGTTWA TKELLEFVAH  360
MKNGDTSVLS QFDTQGLLLE YIKRNNLRDP RQKCQIVCDS RLVTLFGKPR VGHFEMLKLL  420
EYHFLIKEKS PADDVVRVGV ADAVGGQLEA SGSIDSQLIT NNDKRRRTRK KMDERGPLIH  480
PNPDEYAAID VHNINLLYLK RNLVENLLDD FEKFHEKVVG SFVRIRISGF DQKQDMHRLV  540
QVVGTSKVAE SYKVGSRTTN IMLEILNLDK KEVISIDGIS SQEFSEDECR RLRQSIKCGL  600
IKRLKVGEIQ EKTMALQHVK VSDWLEAEIS RLNHLRDRAS EKGHRKELRE CVEKLELLKS  660
PKERERRLLE IPNIHSDPSM DPSHESEEDA GESDEKNPGD HVRPRLTCVG RNGAELNSSL  720
REVDEDVGNS AEKNLATACK RNKSMCIFNM DSDGTTQVHE RVGESTWSHG GGVFRLNSQN  780
TSRNQLGATS SVASDWNSQA ALRSESLPGL VILPPFSSGR EPSVIDFETE KLWRYQDPSG  840
KFQGPFSMLQ LRKWKTSGLF PPDFRVWRIY EKQDDSILLT DALVGRFPKG PLQHCSSYLL  900
PQETTVASND ACKRWGHGLS QSTDVTWIDN KGVDHDLKPV QNGVSVHGNG DNELVRSNEL  960
GFHSSTGTKA VDVAITNTAL AKSSLQGWEL SKGGKSWAGL SPPPSGKLFE TPLLQAREGH  1020
GDEKWSSNPC HADGNSHTTT MGRTNIDEKC KHADSEGYSS QSSGQNWGSQ AIYSSSSGWE  1080
SNSGFVSGAK SSEKSEQNQK IGFSDLPSPT AKHSDGDLKG QAADNKLSVG SNVPVQDSGP  1140
SWSTASSLVV GGGQHREVAG DWGGYSPTPA KPSVEEWDSN LVNASSLKPT EGVSDHAATP  1200
TSGIGQLTHS SPQYPTIDTS TWQPMVPEPN EFCSLVDESV SDLLAEVEAM ESLGGLPSPT  1260
SKMSCGGELT PGSDDDCFSP VEPFSPAPDP GRSDALSSTG DVQMPSQLTA SDEPLRLSLM  1320
PSQPTVTDEP HTITQMSSQL TVTDKPHQLS RMPPHSVAPD EPLGASPVPS KSTLTEESLG  1380
LWQTNFLDPQ KSFSGHSSSS AEVEGDAKRS DVSVNQCSEI EPLASSTVNQ GEAGSDTRSP  1440
TPSAVSQLEA GSDTRHPESS TADASWGTVK GTANLDRGAP QGNMNMAWGT GHGSAQQQTN  1500
SNPAISTGNV GSWGNQLRNG DNRYSGPRDN LNNYFQGRDS GFGRDRSSWN RQPTYGYGNG  1560
GGGSFKPQGK GQRVCKFYEN GYCKKGASCS YLHP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51120.1	0.0	C3H family protein