PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021660639.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 604aa MW: 67802.6 Da PI: 7.1699

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021660639.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.9	5.5e-06	321	335	12	26
TS--TTTTT-SS-SS CS zf-CCCH 12 tGtCkyGdrCkFaHg 26 +G C++G++C+F H+ XP_021660639.1 321 SGSCPRGEKCHFQHD 335 69************7 PP
2	zf-CCCH	18.2	4.4e-06	346	367	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C +f+ G C +G+ C+F H+ XP_021660639.1 346 VCIDFLIKGKCERGPDCNFKHD 367 5********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 604 aa Download sequence
MAPPRILLCG DVLGRLNHLY KRVQSVNKSA GPFDALFCVG QFFPGSPELL EEFMDYVEGR 60 TQIPLPTYFI GDYGVGAPKV LSVASKNSSN LGFKMDGLKI CENLFWLRGS GKFTLYSLSV 120 AYLSGRRSSD SQQFGTYSQD DVDALRALAD EPGIVDLFLT NEWPTGVTNR ATSDIPAGIS 180 DSAGSDSTIS ELVAEIKPRY HIAGAKGVFY AREPYSNIDA VHVTRFFGLA SVGNNDKQKF 240 IHAISPTPGS TMTAVEISMK PSNTTSSPYT FSEQTVHPKE TTKRPSDSVS DSQYWRYDVS 300 QKRQKAGARD GDKLCFKFIY SGSCPRGEKC HFQHDMDARE QYLRGVCIDF LIKGKCERGP 360 DCNFKHDLQS KVESYSHRRH GSENANRSKE CWFCLSSPSV ESHLIISIGE SYYCALAKGP 420 LVQDHVLLIP IEHSPSTLSL PQECESELVR FKNNLKLYFK NGGKEAIIFE WVSKRGTHAN 480 LQAAPVPSSR VAAVQDIFNM AADKLGFKFV AMKFDNSSDS RKWLRAQFDR NYSFFYVELP 540 DGTILSHLIE ENERFPVQFG REVLAGLLNT PERADWRTCK LSKEEETKMV EEFQKKFEEL 600 DPTR

Sequence ? help Back to Top

Protein Sequence Length: 604 aa Download sequence

MAPPRILLCG DVLGRLNHLY KRVQSVNKSA GPFDALFCVG QFFPGSPELL EEFMDYVEGR  60
TQIPLPTYFI GDYGVGAPKV LSVASKNSSN LGFKMDGLKI CENLFWLRGS GKFTLYSLSV  120
AYLSGRRSSD SQQFGTYSQD DVDALRALAD EPGIVDLFLT NEWPTGVTNR ATSDIPAGIS  180
DSAGSDSTIS ELVAEIKPRY HIAGAKGVFY AREPYSNIDA VHVTRFFGLA SVGNNDKQKF  240
IHAISPTPGS TMTAVEISMK PSNTTSSPYT FSEQTVHPKE TTKRPSDSVS DSQYWRYDVS  300
QKRQKAGARD GDKLCFKFIY SGSCPRGEKC HFQHDMDARE QYLRGVCIDF LIKGKCERGP  360
DCNFKHDLQS KVESYSHRRH GSENANRSKE CWFCLSSPSV ESHLIISIGE SYYCALAKGP  420
LVQDHVLLIP IEHSPSTLSL PQECESELVR FKNNLKLYFK NGGKEAIIFE WVSKRGTHAN  480
LQAAPVPSSR VAAVQDIFNM AADKLGFKFV AMKFDNSSDS RKWLRAQFDR NYSFFYVELP  540
DGTILSHLIE ENERFPVQFG REVLAGLLNT PERADWRTCK LSKEEETKMV EEFQKKFEEL  600
DPTR