PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021659076.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 672aa MW: 73382 Da PI: 6.1518

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021659076.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.1	6.4e-08	266	286	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC+ Gd C +aHg XP_021659076.1 266 PCPEFRK-GTCQKGDACEYAHG 286 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 672 aa Download sequence
MCSGSKSKLS PSNPTMEVES GSQKDSISCK CSVLLELSAS DDLVGFKSEV EEKGLDVDEA 60 SYWYGRRIGA KKMGFDERTP LMIAAMFGST NVLKYIIETW KVDVNRTCGW DKVTALHCAV 120 AGSSNSLVEI VKLLLDASAD ANCVDANGNK PSDLLTSSLK SPCNSRRKLV ELLLKGESLS 180 EDEEEKLIMM SLPAKEGTEK KEYPIDVSLP DINNGIYGTD EFRMYCFKVK PCSRAYSHDW 240 TECPFVHPGE NARRRDPKKY PYSCVPCPEF RKGTCQKGDA CEYAHGVFES WLHPAQYRTR 300 LCKDETGCSR KVCFFAHKPE ELRPVYASTG SAMPSPKSVS VSAVDMATLT PLSLGTSSLT 360 LPSVSTPPMS PLSAASSSPK SGGLWQNKVN LTPPALQLPG SRLKTALCAR DFDLEMELLG 420 LENHASQLQQ QQLMDEISGM SSPSCWSKDF NRIGDLKPTN LDDVFGSLDP SLLSPLQGMS 480 LKPSTPSQLQ APTGVQIRQN MNQLRSSYPA NLSSTVRKPS SYGFDSSAAV AAAVMNSRSS 540 AFAKRSLSFI DRGPATNRLG ITAAANSASM MSSNLSDWSS PDGKLDWGVQ GDELNKFKKS 600 ASFGFRSNNR TTAADLTLSN ADEPDVSWVN SLVKDVPPGF DAEKQYNLSK GVHESLQPWM 660 EQLYIEQEQM VA

Sequence ? help Back to Top

Protein Sequence Length: 672 aa Download sequence

MCSGSKSKLS PSNPTMEVES GSQKDSISCK CSVLLELSAS DDLVGFKSEV EEKGLDVDEA  60
SYWYGRRIGA KKMGFDERTP LMIAAMFGST NVLKYIIETW KVDVNRTCGW DKVTALHCAV  120
AGSSNSLVEI VKLLLDASAD ANCVDANGNK PSDLLTSSLK SPCNSRRKLV ELLLKGESLS  180
EDEEEKLIMM SLPAKEGTEK KEYPIDVSLP DINNGIYGTD EFRMYCFKVK PCSRAYSHDW  240
TECPFVHPGE NARRRDPKKY PYSCVPCPEF RKGTCQKGDA CEYAHGVFES WLHPAQYRTR  300
LCKDETGCSR KVCFFAHKPE ELRPVYASTG SAMPSPKSVS VSAVDMATLT PLSLGTSSLT  360
LPSVSTPPMS PLSAASSSPK SGGLWQNKVN LTPPALQLPG SRLKTALCAR DFDLEMELLG  420
LENHASQLQQ QQLMDEISGM SSPSCWSKDF NRIGDLKPTN LDDVFGSLDP SLLSPLQGMS  480
LKPSTPSQLQ APTGVQIRQN MNQLRSSYPA NLSSTVRKPS SYGFDSSAAV AAAVMNSRSS  540
AFAKRSLSFI DRGPATNRLG ITAAANSASM MSSNLSDWSS PDGKLDWGVQ GDELNKFKKS  600
ASFGFRSNNR TTAADLTLSN ADEPDVSWVN SLVKDVPPGF DAEKQYNLSK GVHESLQPWM  660
EQLYIEQEQM VA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	0.0	C3H family protein