PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021658013.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 364aa MW: 41529.1 Da PI: 7.1109

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021658013.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.9	2.7e-06	3	26	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ffa G C G+ C F+H+ XP_021658013.1 3 KRVLCKFFAH-GACLKGEHCEFSHD 26 99**6666.***********5 PP
2	zf-CCCH	19.7	1.5e-06	34	50	5	22
--SGGGGTS--TTTTT-S CS zf-CCCH 5 lCrffartGtCkyGdrCk 22 +C ++++ G+C+yG+rC+ XP_021658013.1 34 ICTYYQK-GICSYGSRCR 50 7****.*******7 PP
3	zf-CCCH	22.3	2.4e-07	101	124	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++lC+ fa+ G C++Gd+C+ +Hg XP_021658013.1 101 DRSLCS-FAAAGNCPRGDKCPHIHG 124 5899.************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MSKRVLCKFF AHGACLKGEH CEFSHDWKDP PNNICTYYQK GICSYGSRCR GTSVPAASGE 60 LSASSRPYFP PTKPAWNLDS RPNNFLENDG IIEPRNVKPE DRSLCSFAAA GNCPRGDKCP 120 HIHGDICPTC GKHCLHPFRP EEREEHLKTC EKKQKHIEAL KHSQDIECSV CLDRVLAKPT 180 AAERKFGLLS ECDHPFCISC IRNWRSNSPT SGMDVNTALR ACPICRKLSY FVVPSVIWYS 240 SKEEKQEIMD SYKAKLRSID CKHFDFGNGN CPFGTSCFYK HTIKPGSYAW KYHRPPPRRP 300 CSRRTSVVDN MNAFFDLFEH LIEEDELDIF DVEDYFDEDY VAFLLMLMNI GSANTSIDDE 360 NSLF

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MSKRVLCKFF AHGACLKGEH CEFSHDWKDP PNNICTYYQK GICSYGSRCR GTSVPAASGE  60
LSASSRPYFP PTKPAWNLDS RPNNFLENDG IIEPRNVKPE DRSLCSFAAA GNCPRGDKCP  120
HIHGDICPTC GKHCLHPFRP EEREEHLKTC EKKQKHIEAL KHSQDIECSV CLDRVLAKPT  180
AAERKFGLLS ECDHPFCISC IRNWRSNSPT SGMDVNTALR ACPICRKLSY FVVPSVIWYS  240
SKEEKQEIMD SYKAKLRSID CKHFDFGNGN CPFGTSCFYK HTIKPGSYAW KYHRPPPRRP  300
CSRRTSVVDN MNAFFDLFEH LIEEDELDIF DVEDYFDEDY VAFLLMLMNI GSANTSIDDE  360
NSLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-147	C3H family protein