PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021658012.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 404aa MW: 45856 Da PI: 7.5319

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021658012.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.7	3.1e-06	3	26	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ffa G C G+ C F+H+ XP_021658012.1 3 KRVLCKFFAH-GACLKGEHCEFSHD 26 99**6666.***********5 PP
2	zf-CCCH	26	1.6e-08	34	54	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ++++ G+C+yG+rC++ H+ XP_021658012.1 34 ICTYYQK-GICSYGSRCRYEHV 54 7****.*********997 PP
3	zf-CCCH	22.1	2.7e-07	141	164	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++lC+ fa+ G C++Gd+C+ +Hg XP_021658012.1 141 DRSLCS-FAAAGNCPRGDKCPHIHG 164 5899.************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MSKRVLCKFF AHGACLKGEH CEFSHDWKDP PNNICTYYQK GICSYGSRCR YEHVKLSRSD 60 TASSSSTLPH QSMVSTSVPL ARPLRTGFGR GTSVPAASGE LSASSRPYFP PTKPAWNLDS 120 RPNNFLENDG IIEPRNVKPE DRSLCSFAAA GNCPRGDKCP HIHGDICPTC GKHCLHPFRP 180 EEREEHLKTC EKKQKHIEAL KHSQDIECSV CLDRVLAKPT AAERKFGLLS ECDHPFCISC 240 IRNWRSNSPT SGMDVNTALR ACPICRKLSY FVVPSVIWYS SKEEKQEIMD SYKAKLRSID 300 CKHFDFGNGN CPFGTSCFYK HTIKPGSYAW KYHRPPPRRP CSRRTSVVDN MNAFFDLFEH 360 LIEEDELDIF DVEDYFDEDY VAFLLMLMNI GSANTSIDDE NSLF

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MSKRVLCKFF AHGACLKGEH CEFSHDWKDP PNNICTYYQK GICSYGSRCR YEHVKLSRSD  60
TASSSSTLPH QSMVSTSVPL ARPLRTGFGR GTSVPAASGE LSASSRPYFP PTKPAWNLDS  120
RPNNFLENDG IIEPRNVKPE DRSLCSFAAA GNCPRGDKCP HIHGDICPTC GKHCLHPFRP  180
EEREEHLKTC EKKQKHIEAL KHSQDIECSV CLDRVLAKPT AAERKFGLLS ECDHPFCISC  240
IRNWRSNSPT SGMDVNTALR ACPICRKLSY FVVPSVIWYS SKEEKQEIMD SYKAKLRSID  300
CKHFDFGNGN CPFGTSCFYK HTIKPGSYAW KYHRPPPRRP CSRRTSVVDN MNAFFDLFEH  360
LIEEDELDIF DVEDYFDEDY VAFLLMLMNI GSANTSIDDE NSLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-145	C3H family protein