PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021657868.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 883aa MW: 98062 Da PI: 8.6483

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021657868.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.1	1.2e-06	165	184	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 lC++fa G C++G+ C+F H XP_021657868.1 165 LCKDFAV-GRCRRGSHCQFLH 184 9****.*********** PP
2	zf-CCCH	17.5	7.5e-06	225	244	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C++f++ G C++G++C+F+H XP_021657868.1 225 CNDFLK-GNCRRGASCRFSHH 244 ****.***********6 PP
3	zf-CCCH	18.9	2.6e-06	287	307	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C+ffa+ G C+ G C+F+H XP_021657868.1 287 VPCKFFAA-GNCRNGKYCRFSH 307 599999.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 883 aa Download sequence
MSGSGRRRSS KWDLKEESRI PFDNVNENAW SGKAGLSFHD KESQHDWLSP EGASSTRAKW 60 PVLEPLSGRR GSHRDDSIDE ERNRSLKAMA TWDGDESYGT RMSPGLDEWR QQNRRNSPKS 120 EWKRSRRSRS RSESRSRSRS PVRGFGRESG LYERSRSRSG VSAQLCKDFA VGRCRRGSHC 180 QFLHQGNQSY VDGWERHRRT VTSKYPTPHD SRDYPSVSGR SVDCCNDFLK GNCRRGASCR 240 FSHHVTSNVT VKESSNDVTR DKNSDRRHRD ASPEKRSDRE TYRASDVPCK FFAAGNCRNG 300 KYCRFSHQDL AHVSPDRSRD GRRSLDQNTD DVAKLWNGPK WGATSALDAG KLSGDKNVTI 360 GTPDQRGTAR AVGDKWGHCL EEDKTLGNAP IDHKMVKSET DLTWNTENAS DNMVASEQRP 420 GGENWLGDMD MSPEWNYKFR HSNHFDKLAS LTSCNPSITR EVSDHAHDVT AVVPSLTNES 480 SAKPQDYKLK DVGANAVPHD DNSVTGKTAS SHSSISANII SAQSLDQNGM NSNALHLSGL 540 NVIGQGQVTI PTSGGGNVNP QDQMLLQEGK TINKPDNDGD ANASQMNSGV SMTQKLVSNS 600 EQLTQLTNIS ASLAHLLANG KQLPHLFAVH NSNAHNYTET SSIVNTEELV KPDSAVTTES 660 NQNVGLRKQY DPICDSLDAE KNVVNYNPPG FSQNFVIEKK VVDGKPEMSS KSLSPSVAGA 720 PKAGDYNKFH SLQEPDGKSY QVNEMEPGAN SIVTKENNGV VTEESRKVEE DKTAQENDVL 780 ENIDGDGKTD EGKQSKDVKG IRAFKFALVE FVKELLKPKW KEGQMTKDAY KNVVKKVVDK 840 VTGSMQGGTI PQTQERIQQY LSFSKPKLTK LVQAYVEKFQ KDK

Sequence ? help Back to Top

Protein Sequence Length: 883 aa Download sequence

MSGSGRRRSS KWDLKEESRI PFDNVNENAW SGKAGLSFHD KESQHDWLSP EGASSTRAKW  60
PVLEPLSGRR GSHRDDSIDE ERNRSLKAMA TWDGDESYGT RMSPGLDEWR QQNRRNSPKS  120
EWKRSRRSRS RSESRSRSRS PVRGFGRESG LYERSRSRSG VSAQLCKDFA VGRCRRGSHC  180
QFLHQGNQSY VDGWERHRRT VTSKYPTPHD SRDYPSVSGR SVDCCNDFLK GNCRRGASCR  240
FSHHVTSNVT VKESSNDVTR DKNSDRRHRD ASPEKRSDRE TYRASDVPCK FFAAGNCRNG  300
KYCRFSHQDL AHVSPDRSRD GRRSLDQNTD DVAKLWNGPK WGATSALDAG KLSGDKNVTI  360
GTPDQRGTAR AVGDKWGHCL EEDKTLGNAP IDHKMVKSET DLTWNTENAS DNMVASEQRP  420
GGENWLGDMD MSPEWNYKFR HSNHFDKLAS LTSCNPSITR EVSDHAHDVT AVVPSLTNES  480
SAKPQDYKLK DVGANAVPHD DNSVTGKTAS SHSSISANII SAQSLDQNGM NSNALHLSGL  540
NVIGQGQVTI PTSGGGNVNP QDQMLLQEGK TINKPDNDGD ANASQMNSGV SMTQKLVSNS  600
EQLTQLTNIS ASLAHLLANG KQLPHLFAVH NSNAHNYTET SSIVNTEELV KPDSAVTTES  660
NQNVGLRKQY DPICDSLDAE KNVVNYNPPG FSQNFVIEKK VVDGKPEMSS KSLSPSVAGA  720
PKAGDYNKFH SLQEPDGKSY QVNEMEPGAN SIVTKENNGV VTEESRKVEE DKTAQENDVL  780
ENIDGDGKTD EGKQSKDVKG IRAFKFALVE FVKELLKPKW KEGQMTKDAY KNVVKKVVDK  840
VTGSMQGGTI PQTQERIQQY LSFSKPKLTK LVQAYVEKFQ KDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	3e-13	C3H family protein