PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021656457.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

CO-like

Protein Properties

Length: 434aa MW: 48883.6 Da PI: 5.0499

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021656457.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	32.2	2.1e-10	16	59	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ +++k++++fC +++ +lC+ C ++ H+ H++v XP_021656457.1 16 ARPCDGCSRKRARWFCASDDAFLCQACDESVHSAnqlasrHERV 59 678*****************************667888888876 PP
2	CCT	68.7	1.5e-23	379	421	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea++lRYkeKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+ XP_021656457.1 379 REARVLRYKEKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 421 9****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MITERKAAKA LAGKTARPCD GCSRKRARWF CASDDAFLCQ ACDESVHSAN QLASRHERVR 60 LETASSKTSG SINSVDSHPW LQGFTKKART PRHNNKKSLL AHQQLKDEEK ILMNSLPLVP 120 EIDSEEEGNT VVDEDEDQLL YRVPVFDHFA AELCTDDMIA CEGNEIAMGN EEGNMVFDGC 180 GQGGTKCDLN NLPAFVPSDM DLAEFAADVE NLLGRGLEDN SPDIKDFGLL DYKEEDDDKF 240 CFEDKVVKVK DEQELEAFTD CHFDQAFDIA REPFDWNFNY ESPITGDEEE EEKAVPSVTD 300 TTMMNSGNTK EMGRNVSLRL DYEAVITAWA SHGSPWTTGS RPELNPDDCW PHYMGTCPNA 360 HHHPYGVLGG HTGGGNGGRE ARVLRYKEKR RTRLFSKKIR YEVRKLNAEK RPRMKGRFVK 420 RMSFMGTAFP CINK

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MITERKAAKA LAGKTARPCD GCSRKRARWF CASDDAFLCQ ACDESVHSAN QLASRHERVR  60
LETASSKTSG SINSVDSHPW LQGFTKKART PRHNNKKSLL AHQQLKDEEK ILMNSLPLVP  120
EIDSEEEGNT VVDEDEDQLL YRVPVFDHFA AELCTDDMIA CEGNEIAMGN EEGNMVFDGC  180
GQGGTKCDLN NLPAFVPSDM DLAEFAADVE NLLGRGLEDN SPDIKDFGLL DYKEEDDDKF  240
CFEDKVVKVK DEQELEAFTD CHFDQAFDIA REPFDWNFNY ESPITGDEEE EEKAVPSVTD  300
TTMMNSGNTK EMGRNVSLRL DYEAVITAWA SHGSPWTTGS RPELNPDDCW PHYMGTCPNA  360
HHHPYGVLGG HTGGGNGGRE ARVLRYKEKR RTRLFSKKIR YEVRKLNAEK RPRMKGRFVK  420
RMSFMGTAFP CINK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	390	406	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	3e-83	CO-like family protein