PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021654811.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | C3H | ||||||||
Protein Properties | Length: 441aa MW: 47896.3 Da PI: 7.2315 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35 | 2.5e-11 | 47 | 73 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C yG++C+F+H+p XP_021654811.1 47 PGEPDCVYYLRTGLCGYGSNCRFNHPP 73 5789*********************97 PP | |||||||
2 | zf-CCCH | 36.5 | 8.3e-12 | 90 | 114 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCkyG++Ck++H++ XP_021654811.1 90 QPDCGYYLKTGTCKYGSTCKYHHPR 114 789********************96 PP | |||||||
3 | zf-CCCH | 36.5 | 7.9e-12 | 136 | 159 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtG Ck+G CkF+H++ XP_021654811.1 136 KSCPYYLRTGSCKFGVACKFHHPQ 159 66********************97 PP | |||||||
4 | zf-CCCH | 37.5 | 3.8e-12 | 278 | 303 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ +GtCkyG+ Ck++H++ XP_021654811.1 278 DQPECRYFMNNGTCKYGSDCKYHHPK 303 689*********************96 PP | |||||||
5 | zf-CCCH | 35.4 | 1.8e-11 | 323 | 349 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++ +G+Ck+G++C+F H++ XP_021654811.1 323 PGQPICSNYSMYGICKFGPTCRFDHPF 349 5789*********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence |
MWVYGFESFY AVPFNDCGDS DAIWRLKIHD NQEQGGMAPS STYPDRPGEP DCVYYLRTGL 60 CGYGSNCRFN HPPAAQGTQF REELPERAGQ PDCGYYLKTG TCKYGSTCKY HHPRDRNGAG 120 PVSFNILGLP MRQDEKSCPY YLRTGSCKFG VACKFHHPQP APLGAGLPLT EPAGSGPMGS 180 STAPSSGLPY VGGLPTWSLV RAPYVSGPRL QGPQAYMPVV LSPTQGVFPA QGWNTYVGNL 240 SPLSSASVLG SNLVYNSRNQ GDSGSRSTTN TNLPERPDQP ECRYFMNNGT CKYGSDCKYH 300 HPKERIAQIA TNPVGPAGLP SRPGQPICSN YSMYGICKFG PTCRFDHPFP GYPYSYSLSL 360 QPVSIFDSSL LTYPRMSPPA LSSESPVSLS SKFPDWVQNP DGASNKHPNS DTNIKISDDQ 420 PEQAGSPPPH SSQDSSEPSH D |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 1e-113 | C3H family protein |