PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_021654218.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 145aa MW: 16084.1 Da PI: 8.4618 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.1 | 1.1e-11 | 63 | 84 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f +tG+C+yGd+Ck+ H+ XP_021654218.1 63 VCNRFVKTGFCPYGDSCKYLHP 84 5********************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 145 aa Download sequence |
MPLGKYYCDY CDKEFQDTPV ARKRHLQSSS HLRAKSLWYN SLKSQDLNQA YIDGGGGAFT 60 KGVCNRFVKT GFCPYGDSCK YLHPTNSNNL QNNVNLFQGN QLVGGSSLPA DVVRDSMGMP 120 WGNLPPSLKP PPEGGYLPFP FVDWG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G26749.1 | 2e-49 | C3H family protein |