PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021653516.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | LBD | ||||||||
Protein Properties | Length: 211aa MW: 23223.4 Da PI: 7.3568 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.2 | 1.5e-39 | 11 | 112 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p +r +a+ +++yeA+ar+rdPvyG+v++i++lqqq+++l+a+l XP_021653516.1 11 PCGACKFLRRKCASDCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHVPAADRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQL 105 7*************************99******************************************************************* PP DUF260 95 allkeel 101 ++k++l XP_021653516.1 106 MQVKAQL 112 *999875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence |
MASSGSGTGS PCGACKFLRR KCASDCIFAP YFCSEQGPAR FAAIHKVFGA SNVSKLLLHV 60 PAADRCEAVV TIAYEAQARI RDPVYGCVAH IFALQQQVAC LQAQLMQVKA QLAQNLVDSS 120 RNIENQWQGN MYGVQSSFPS NYHHQAYNCM MNPISPQSSL ESVEHSNDGI ISMQDIQSNS 180 EDFSFQSCTK KKPYEPDLGE LQALALRMMR N |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 3e-68 | LBD family protein |