PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021650836.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 538aa MW: 60913.2 Da PI: 7.0158

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021650836.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.9	5.7e-06	85	107	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C f++ G+C GdrC+F+H+p XP_021650836.1 85 VPCYFYYS-GFCGKGDRCSFMHDP 107 58998888.*************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence
MEEELQKRNT DCVYFLASPL TCKKGMDCEY RHNEIARLNP RDCWYWLAGN CLNPTCGFRH 60 PPLEKHAEAP SESASSSPPA KKPNVPCYFY YSGFCGKGDR CSFMHDPDAS TPTGKSVNTL 120 LAKEGTPLEN KTSVGNDIVS APTEAHANPS ETAPKAVMGL KLQHKEDVQL PAPKNAVVET 180 SFPEIAVTHC EEAVSFKSDF LLQANSFIRS RSHISTDQSS EEQVHDHVEP EERWESSPGF 240 DVLVDDKSEN LGYKDDQEYL LALDREQREL NNHFLGYQFD DLEYDLTYCD ADAMYNREIY 300 DSFDCTDNVH LIDDVGNCSG CSSGQMLDSP LLRKRKLLPM ELHINGQRVV DLRDCLRKRR 360 VIDGHPVIRP SRRHDSSRLH DRSRERPRRP SLSQRLHGRL ASEVRKNTIG SLGDNGIMLN 420 GTNPRGWHRH SRLSKSRLRN KENKLAKRQF LSSEMPSKPV PRERKYTQAS AEFTGPKSLA 480 QIKEEKKKAE ENGEYTGKTG YSSRMVSADF EGPKPLSEIL KDKRKMGTVE GSDGITDY

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence

MEEELQKRNT DCVYFLASPL TCKKGMDCEY RHNEIARLNP RDCWYWLAGN CLNPTCGFRH  60
PPLEKHAEAP SESASSSPPA KKPNVPCYFY YSGFCGKGDR CSFMHDPDAS TPTGKSVNTL  120
LAKEGTPLEN KTSVGNDIVS APTEAHANPS ETAPKAVMGL KLQHKEDVQL PAPKNAVVET  180
SFPEIAVTHC EEAVSFKSDF LLQANSFIRS RSHISTDQSS EEQVHDHVEP EERWESSPGF  240
DVLVDDKSEN LGYKDDQEYL LALDREQREL NNHFLGYQFD DLEYDLTYCD ADAMYNREIY  300
DSFDCTDNVH LIDDVGNCSG CSSGQMLDSP LLRKRKLLPM ELHINGQRVV DLRDCLRKRR  360
VIDGHPVIRP SRRHDSSRLH DRSRERPRRP SLSQRLHGRL ASEVRKNTIG SLGDNGIMLN  420
GTNPRGWHRH SRLSKSRLRN KENKLAKRQF LSSEMPSKPV PRERKYTQAS AEFTGPKSLA  480
QIKEEKKKAE ENGEYTGKTG YSSRMVSADF EGPKPLSEIL KDKRKMGTVE GSDGITDY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	332	337	LRKRKL