PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021650827.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 344aa MW: 38706.6 Da PI: 8.5473

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021650827.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.5	1.1e-08	86	111	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+ C f+ G C+ G++C+FaHg+ XP_021650827.1 86 FKTRMCAKFRT-GNCRNGENCNFAHGM 111 699****99.***********95 PP
2	zf-CCCH	27.4	5.8e-09	149	172	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k++lC+ f+ + +C+yG++C+F H XP_021650827.1 149 KMKLCKKFYNGEECPYGESCNFLH 172 789*****66********** PP
3	zf-CCCH	42.1	1.5e-13	233	259	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC + tG+C++G++C+FaHg+ XP_021650827.1 233 WKTKLCTKWETTGQCPFGEKCHFAHGQ 259 8************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MSYPDSRPPY MSTQLPYQPG NDAIGVWPQF PTNSNEQFDL HSQFEQHQSP YKRTRISEDS 60 SSQSVNFRMP LPNNPPINKG TTSIFFKTRM CAKFRTGNCR NGENCNFAHG MQDLRQPPPN 120 WQELVGVGVR GEEDRSAGNW DDDQRIIHKM KLCKKFYNGE ECPYGESCNF LHEDPSKFRD 180 DARRSRESSA ISIGTTGQPV IHGIGRLNTT EVNKPINNAG SDAIRANMKP VYWKTKLCTK 240 WETTGQCPFG EKCHFAHGQA ELQVPGGRVE GEAGNAGSIL TKPPPIIGNH VSPIMTASVP 300 NFIEEGQSKK CLLKWKRAKK INLIYGDWLD DLPIVHNLTN QVKS

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MSYPDSRPPY MSTQLPYQPG NDAIGVWPQF PTNSNEQFDL HSQFEQHQSP YKRTRISEDS  60
SSQSVNFRMP LPNNPPINKG TTSIFFKTRM CAKFRTGNCR NGENCNFAHG MQDLRQPPPN  120
WQELVGVGVR GEEDRSAGNW DDDQRIIHKM KLCKKFYNGE ECPYGESCNF LHEDPSKFRD  180
DARRSRESSA ISIGTTGQPV IHGIGRLNTT EVNKPINNAG SDAIRANMKP VYWKTKLCTK  240
WETTGQCPFG EKCHFAHGQA ELQVPGGRVE GEAGNAGSIL TKPPPIIGNH VSPIMTASVP  300
NFIEEGQSKK CLLKWKRAKK INLIYGDWLD DLPIVHNLTN QVKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	5e-88	C3H family protein