PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021650016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | LBD | ||||||||
Protein Properties | Length: 315aa MW: 35692.3 Da PI: 6.141 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.7 | 5.4e-40 | 77 | 176 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k l++ ++++am+++++++++ra+dPv G++++i++lq+q+e +kael+ XP_021650016.1 77 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKPLSQPDKDEAMRTIIFQSDVRASDPVGGCYRIIRELQRQIEYHKAELD 171 7*********************************************************************************************9 PP DUF260 96 llkee 100 l+ ++ XP_021650016.1 172 LVLHQ 176 98776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence |
MSISPPISLH LPFSLVFLHR EKEGSATTRE KKEAPLKKTA PSPPATQPIS HHQQKQTITT 60 TSNNMSIPRI GNGTTQACAA CKYQRRKCAP DCILAPYFPH DRQRQFLNAH KLFGVSNITK 120 IIKPLSQPDK DEAMRTIIFQ SDVRASDPVG GCYRIIRELQ RQIEYHKAEL DLVLHQLAIC 180 RAQAHQQTHF QMLETDDSAT LGCEIVNQDS LDIYDPTMMQ YHYPQTQEEE QEFVVPDHDQ 240 QLQELVVNET AALTIQDSTH VVSSSSSPSL HNVKQPYVNE CDDIKPLLDI NDVKFEPEEL 300 VERNFVPSTQ LVISS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 1e-70 | LBD family protein |