PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021649999.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C2H2

Protein Properties

Length: 548aa MW: 59346.1 Da PI: 9.2218

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021649999.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	87	109	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_021649999.1 87 FVCEICNKGFQRDQNLQLHRRGH 109 89*******************88 PP
2	zf-C2H2	12.6	0.00041	163	185	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_021649999.1 163 WKCDKCSKRYAVQSDWKAHSKTC 185 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence
MMKGLMFHQQ QQPQEENMSN LTSASGEASV SSGNRNETGT NYPQQYFAPP PPQTQPVKKK 60 RNLPGNPDPD AEVIALSPKT LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTS 120 KDIRKKVYVC PETSCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK RYAVQSDWKA 180 HSKTCGTREY RCDCGTLFSR RDSFITHRAF CDALAEESAR AITGAPNPVV LHSSQPAAPG 240 SSIPHNINLQ IPQFNTSAQD LHAFSLKKEQ QSFSTLRSEL PPWLACPPPG LRGGAGPGPP 300 HHHHQQTPVD HLSSSSSSIP THHQELSPNP NPSLGPTLPH YRQAAPSPHM SATALLQKAA 360 QMGATMSSKT TSLMRPHHHQ QQPQHHHQEG AHVSSHSGNN NANTTGFGLN FSSPEEQLPG 420 GGSIFHGLQA PFRNKAVPSG TTKVGTSGSP PSGALLQEMM NSLSSASGFE GSNSFEDAFV 480 GGILNTKKSD DNAGGGGGGS GCSGEGLTRD FLGLRAFSQS DILSMAGLGN CVNTSHEQHN 540 QSQKTWQG

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence

MMKGLMFHQQ QQPQEENMSN LTSASGEASV SSGNRNETGT NYPQQYFAPP PPQTQPVKKK  60
RNLPGNPDPD AEVIALSPKT LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTS  120
KDIRKKVYVC PETSCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK RYAVQSDWKA  180
HSKTCGTREY RCDCGTLFSR RDSFITHRAF CDALAEESAR AITGAPNPVV LHSSQPAAPG  240
SSIPHNINLQ IPQFNTSAQD LHAFSLKKEQ QSFSTLRSEL PPWLACPPPG LRGGAGPGPP  300
HHHHQQTPVD HLSSSSSSIP THHQELSPNP NPSLGPTLPH YRQAAPSPHM SATALLQKAA  360
QMGATMSSKT TSLMRPHHHQ QQPQHHHQEG AHVSSHSGNN NANTTGFGLN FSSPEEQLPG  420
GGSIFHGLQA PFRNKAVPSG TTKVGTSGSP PSGALLQEMM NSLSSASGFE GSNSFEDAFV  480
GGILNTKKSD DNAGGGGGGS GCSGEGLTRD FLGLRAFSQS DILSMAGLGN CVNTSHEQHN  540
QSQKTWQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	126	KLKQRTSKDIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-132	C2H2 family protein