PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021649623.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

RAV

Protein Properties

Length: 368aa MW: 40860 Da PI: 9.6264

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021649623.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	43.9	5.8e-14	68	116	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAaka++ a+++++g XP_021649623.1 68 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAAKAYDIAAQRFRG 116 89**9888.8*****3.....5******99***********98 PP
2	B3	103.8	8.9e-33	201	300	1	95
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+ tpsdv+k++rlv+pk++ae+h g+++++++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++ ++ XP_021649623.1 201 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqsGSNSTKGVLLNFEDITGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQRSTGPDK 295 89***************************99999**************************************************8766776 PP ..EEE CS B3 91 elvvk 95 +l++ XP_021649623.1 296 QLYID 300 66665 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MDGSCIDEST TSDSISISIS ITPKSAVSSF PPPTKSSESP LCRVGSGSSV ILDSESGVEA 60 ESRKLPSSKY KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE DEAAKAYDIA AQRFRGRDAI 120 TNFKPQGAET EEDDIETAFL NSHSKAEIVD MLRKHTYNDE LEQSKRNYRI DGQGKQNRNP 180 GANNVAVYGS DRVLKAREQL FEKAVTPSDV GKLNRLVIPK QHAEKHFPLQ SGSNSTKGVL 240 LNFEDITGKV WRFRYSYWNS SQSYVLTKGW SRFVKEKNLK AGDIVSFQRS TGPDKQLYID 300 WKVRAGSNPV VCTVQPVQMV RLFGVNIFKV PGNSGVTEGA GGCNGKRMRE MELLSLDSIK 360 KQRIIGAL

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MDGSCIDEST TSDSISISIS ITPKSAVSSF PPPTKSSESP LCRVGSGSSV ILDSESGVEA  60
ESRKLPSSKY KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE DEAAKAYDIA AQRFRGRDAI  120
TNFKPQGAET EEDDIETAFL NSHSKAEIVD MLRKHTYNDE LEQSKRNYRI DGQGKQNRNP  180
GANNVAVYGS DRVLKAREQL FEKAVTPSDV GKLNRLVIPK QHAEKHFPLQ SGSNSTKGVL  240
LNFEDITGKV WRFRYSYWNS SQSYVLTKGW SRFVKEKNLK AGDIVSFQRS TGPDKQLYID  300
WKVRAGSNPV VCTVQPVQMV RLFGVNIFKV PGNSGVTEGA GGCNGKRMRE MELLSLDSIK  360
KQRIIGAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25560.1	1e-155	RAV family protein