PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021646781.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | LBD | ||||||||
Protein Properties | Length: 210aa MW: 23029.2 Da PI: 8.5843 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 97.1 | 1.8e-30 | 2 | 102 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C++ C+l+ ++ p++q +++ +++k+FG+s +++l++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+ XP_021646781.1 2 SCNGCRVLRKGCSETCILRSCLhwissPEAQGNATLFLAKFFGRSDLMSLISAVPESQRPALFQSLLFEACGRTVNPVNGAVGLLWSGNWHVCQA 96 6********************************************************************************************** PP DUF260 91 kaelal 96 ++e++l XP_021646781.1 97 AVETVL 102 *99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence |
MSCNGCRVLR KGCSETCILR SCLHWISSPE AQGNATLFLA KFFGRSDLMS LISAVPESQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWSGN WHVCQAAVET VLSGGILRPI PAILTGVFAP 120 NYDESSDSFS AEACKLRNMW TQSKPYANIT RENQASDLNL SLTPKLVAAG RTGRQKRGRD 180 AVSFYREESS ETTTFESNGN DRKKLLNLFI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 1e-68 | LBD family protein |