PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021646076.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
Family C3H
Protein Properties Length: 442aa    MW: 48339.7 Da    PI: 8.5111
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021646076.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.6e-115278127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C+++ rtG C++G++C+F+H+p
  XP_021646076.1 52 PGEPDCSYYIRTGLCRFGATCRFNHPP 78
                    5789*********************97 PP

2zf-CCCH39.21.2e-1299123327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+++++tGtCk+G++CkF+H++
  XP_021646076.1  99 QPECQYYLKTGTCKFGATCKFHHPK 123
                     799********************96 PP

3zf-CCCH36.96.1e-12147169527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     +C +++rtG+Ck+G++CkF+H++
  XP_021646076.1 147 ECAYYLRTGQCKFGSTCKFHHPQ 169
                     7********************97 PP

4zf-CCCH375.7e-12303329127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+f+++tG Ck+G+ C+F+H++
  XP_021646076.1 303 PGQPECQFYMKTGDCKFGPVCRFHHPR 329
                     5789*********************96 PP

5zf-CCCH391.4e-12349375127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++lC f++r+G Ck+G++CkF H++
  XP_021646076.1 349 PGEPLCIFYSRYGVCKFGPSCKFDHPM 375
                     589**********************95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    
MDFDAGITMS RTGPPPVTEG PSLSPSLNED AMWQMNLRTN ETMESGPYPE RPGEPDCSYY  60
IRTGLCRFGA TCRFNHPPNR KLAIAAARMK GEFPERIGQP ECQYYLKTGT CKFGATCKFH  120
HPKEKAGIAG RVSLNILGYP LRPNEIECAY YLRTGQCKFG STCKFHHPQP ANVMVPLRGS  180
PVYPTVQSPT TPGQQSYPGG LTNWSRASFI TSPRWQAPSS YTPLILPQGV VSVPGWNAYS  240
GQLGSVSSPE GQQQTGNSQI YGTSRQSESM NAGSQGTLSP FRSGSVPVGF YTLQRENVFP  300
ERPGQPECQF YMKTGDCKFG PVCRFHHPRE RLIPPPDCVL SPLGLPLRPG EPLCIFYSRY  360
GVCKFGPSCK FDHPMGIFTY NFSASSSADA PVRRFLGTSS GSAALTLSPE GLVEAGSTKP  420
RRLSLSEPRQ MPSGDDNIDT EG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0C3H family protein