PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021646076.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | C3H | ||||||||
Protein Properties | Length: 442aa MW: 48339.7 Da PI: 8.5111 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.6 | 1.6e-11 | 52 | 78 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p XP_021646076.1 52 PGEPDCSYYIRTGLCRFGATCRFNHPP 78 5789*********************97 PP | |||||||
2 | zf-CCCH | 39.2 | 1.2e-12 | 99 | 123 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_021646076.1 99 QPECQYYLKTGTCKFGATCKFHHPK 123 799********************96 PP | |||||||
3 | zf-CCCH | 36.9 | 6.1e-12 | 147 | 169 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+G++CkF+H++ XP_021646076.1 147 ECAYYLRTGQCKFGSTCKFHHPQ 169 7********************97 PP | |||||||
4 | zf-CCCH | 37 | 5.7e-12 | 303 | 329 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_021646076.1 303 PGQPECQFYMKTGDCKFGPVCRFHHPR 329 5789*********************96 PP | |||||||
5 | zf-CCCH | 39 | 1.4e-12 | 349 | 375 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G Ck+G++CkF H++ XP_021646076.1 349 PGEPLCIFYSRYGVCKFGPSCKFDHPM 375 589**********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence |
MDFDAGITMS RTGPPPVTEG PSLSPSLNED AMWQMNLRTN ETMESGPYPE RPGEPDCSYY 60 IRTGLCRFGA TCRFNHPPNR KLAIAAARMK GEFPERIGQP ECQYYLKTGT CKFGATCKFH 120 HPKEKAGIAG RVSLNILGYP LRPNEIECAY YLRTGQCKFG STCKFHHPQP ANVMVPLRGS 180 PVYPTVQSPT TPGQQSYPGG LTNWSRASFI TSPRWQAPSS YTPLILPQGV VSVPGWNAYS 240 GQLGSVSSPE GQQQTGNSQI YGTSRQSESM NAGSQGTLSP FRSGSVPVGF YTLQRENVFP 300 ERPGQPECQF YMKTGDCKFG PVCRFHHPRE RLIPPPDCVL SPLGLPLRPG EPLCIFYSRY 360 GVCKFGPSCK FDHPMGIFTY NFSASSSADA PVRRFLGTSS GSAALTLSPE GLVEAGSTKP 420 RRLSLSEPRQ MPSGDDNIDT EG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 0.0 | C3H family protein |