PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021644938.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

ARF

Protein Properties

Length: 787aa MW: 87355.3 Da PI: 6.6363

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021644938.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.9	4.5e-24	156	257	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F + ++ XP_021644938.1 156 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RGED 247 99**************************963.3445679********************************************..4499 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_021644938.1 248 GELRLGIRRA 257 99***996 PP
2	Auxin_resp	125.8	2.8e-41	282	363	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+stks+F+v+Y+Pras++eFvv+++k++k++ ++v++G+Rfkm+fe++ds+err+sG+v+g+sdldp+rWpnSkWr+L XP_021644938.1 282 VANAISTKSMFNVLYSPRASHAEFVVPYKKYMKSIMNPVCIGTRFKMRFEMDDSPERRCSGVVTGMSDLDPYRWPNSKWRCL 363 689******************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 787 aa Download sequence
MEIDLNHAVT EVEKNAFCTN GDSSSSSCSS NSSPSPMPSS IYLELWHACA GPLTSLPKKG 60 NVVVYFPQGH LEQVASSAPF SPMEMPTFDL QPQIFCKVVN VQFLANKEND EVYTQLTLLP 120 QPELVGHDLE GKELENLGVD EEGGGGLPAK STPHMFCKTL TASDTSTHGG FSVPRRAAED 180 CFPPLDYKQQ RPSQELVAKD LHGVEWRFRH IYRGQPRRHL LTTGWSIFVS QKNLVSGDAV 240 LFLRGEDGEL RLGIRRAVRP RNGLPDSVVG KQNSYPSVLS LVANAISTKS MFNVLYSPRA 300 SHAEFVVPYK KYMKSIMNPV CIGTRFKMRF EMDDSPERRC SGVVTGMSDL DPYRWPNSKW 360 RCLMVRWDED VVSDHQERVS LWEIDPSVSL PPLSIQSSPR LKKLRTGLPA NPPDNPITGG 420 GGFLDFEESG RSSKVLQGQE NVGFVSPLYG HDTLNRPPDF EMQNSAHQNL VSTGRDKANI 480 SEITRARSTT YTGFAESNRF PKVLQGQEIC PLRSLTGKSD FNLGAWGRPN LRCGPFNIYQ 540 APRPNFYPLA AESFQNMYFP YADLYKTGQD PRMCSYATNF PREKLQFGAS SIQTGVARDE 600 VGKPNQSSEH KSQETISASP ALGVNLINQK DNSFNGTASG CKLFGFSLTA ESPTPNSQNS 660 GKRSCTKVHK QGSLVGRAID LSRLNGYDDL LSELERLFSM EGFLRDHKKG WRILYTDSEN 720 DVMVVGDDPW HEFCNVVSKI HIYTQEEVEK MTIGVIGDDT QSCLDQAHVV MEASKSSSVG 780 QPDSSPQ

Sequence ? help Back to Top

Protein Sequence Length: 787 aa Download sequence

MEIDLNHAVT EVEKNAFCTN GDSSSSSCSS NSSPSPMPSS IYLELWHACA GPLTSLPKKG  60
NVVVYFPQGH LEQVASSAPF SPMEMPTFDL QPQIFCKVVN VQFLANKEND EVYTQLTLLP  120
QPELVGHDLE GKELENLGVD EEGGGGLPAK STPHMFCKTL TASDTSTHGG FSVPRRAAED  180
CFPPLDYKQQ RPSQELVAKD LHGVEWRFRH IYRGQPRRHL LTTGWSIFVS QKNLVSGDAV  240
LFLRGEDGEL RLGIRRAVRP RNGLPDSVVG KQNSYPSVLS LVANAISTKS MFNVLYSPRA  300
SHAEFVVPYK KYMKSIMNPV CIGTRFKMRF EMDDSPERRC SGVVTGMSDL DPYRWPNSKW  360
RCLMVRWDED VVSDHQERVS LWEIDPSVSL PPLSIQSSPR LKKLRTGLPA NPPDNPITGG  420
GGFLDFEESG RSSKVLQGQE NVGFVSPLYG HDTLNRPPDF EMQNSAHQNL VSTGRDKANI  480
SEITRARSTT YTGFAESNRF PKVLQGQEIC PLRSLTGKSD FNLGAWGRPN LRCGPFNIYQ  540
APRPNFYPLA AESFQNMYFP YADLYKTGQD PRMCSYATNF PREKLQFGAS SIQTGVARDE  600
VGKPNQSSEH KSQETISASP ALGVNLINQK DNSFNGTASG CKLFGFSLTA ESPTPNSQNS  660
GKRSCTKVHK QGSLVGRAID LSRLNGYDDL LSELERLFSM EGFLRDHKKG WRILYTDSEN  720
DVMVVGDDPW HEFCNVVSKI HIYTQEEVEK MTIGVIGDDT QSCLDQAHVV MEASKSSSVG  780
QPDSSPQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60450.1	0.0	ARF family protein